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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSVK] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016593
FSVK01000123
[FSVK] metagenome; soil
5
80
+
Phe
GAA
[ENA]
¢þ
>WENV180016595
FSVK01000222
[FSVK] metagenome; soil
224
148
-
His
GTG
[ENA]
¢þ
>WENV180016588
FSVK01000031
[FSVK] metagenome; soil
421
497
+
Pro
CGG
[ENA]
¢þ
>WENV180016591
FSVK01000063
[FSVK] metagenome; soil
527
441
-
Leu
CAG
[ENA]
¢þ
>WENV180016592
FSVK01000089
[FSVK] metagenome; soil
534
459
-
Thr
TGT
[ENA]
¢þ
>WENV180016590
FSVK01000046
[FSVK] metagenome; soil
2288
2215
-
Gly
CCC
[ENA]
¢þ
>WENV180016589
FSVK01000040
[FSVK] metagenome; soil
2480
2407
-
Gln
CTG
[ENA]
¢þ
>WENV180016594
FSVK01000169
[FSVK] metagenome; soil
3924
3849
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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