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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSVN] metagenome; soil
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016613
FSVN01000232
[FSVN] metagenome; soil
7
82
+
Lys
CTT
[ENA]
¢þ
>WENV180016616
FSVN01000346
[FSVN] metagenome; soil
81
7
-
Gly
GCC
[ENA]
¢þ
>WENV180016614
FSVN01000261
[FSVN] metagenome; soil
89
1
-
Ser
GCT
[ENA]
¢þ
>WENV180016615
FSVN01000346
[FSVN] metagenome; soil
203
129
-
Gly
GCC
[ENA]
¢þ
>WENV180016618
FSVN01000395
[FSVN] metagenome; soil
508
433
-
Ile2
CAT
[ENA]
¢þ
>WENV180016610
FSVN01000117
[FSVN] metagenome; soil
1514
1589
+
Phe
GAA
[ENA]
¢þ
>WENV180016607
FSVN01000048
[FSVN] metagenome; soil
2441
2516
+
Thr
TGT
[ENA]
¢þ
>WENV180016617
FSVN01000371
[FSVN] metagenome; soil
2943
3018
+
Thr
CGT
[ENA]
¢þ
>WENV180016612
FSVN01000205
[FSVN] metagenome; soil
3503
3578
+
Ala
CGC
[ENA]
¢þ
>WENV180016611
FSVN01000182
[FSVN] metagenome; soil
3738
3822
+
Leu
CAA
[ENA]
¢þ
>WENV180016619
FSVN01000419
[FSVN] metagenome; soil
4118
4043
-
Trp
CCA
[ENA]
¢þ
>WENV180016608
FSVN01000051
[FSVN] metagenome; soil
4224
4150
-
Val
CAC
[ENA]
¢þ
>WENV180016609
FSVN01000091
[FSVN] metagenome; soil
5620
5546
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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