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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSVO] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016623
FSVO01000017
[FSVO] metagenome; soil
43
116
+
Thr
CGT
[ENA]
¢þ
>WENV180016621
FSVO01000005
[FSVO] metagenome; soil
416
492
+
His
GTG
[ENA]
¢þ
>WENV180016625
FSVO01000063
[FSVO] metagenome; soil
1774
1701
-
Gly
TCC
[ENA]
¢þ
>WENV180016620
FSVO01000003
[FSVO] metagenome; soil
2322
2398
+
Pro
GGG
[ENA]
¢þ
>WENV180016624
FSVO01000063
[FSVO] metagenome; soil
2382
2456
+
Pro
TGG
[ENA]
¢þ
>WENV180016622
FSVO01000005
[FSVO] metagenome; soil
3082
3008
-
Lys
TTT
[ENA]
¢þ
>WENV180016627
FSVO01000076
[FSVO] metagenome; soil
3372
3299
-
Gly
TCC
[ENA]
¢þ
>WENV180016626
FSVO01000076
[FSVO] metagenome; soil
3892
3966
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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