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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSVS] metagenome; soil
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016659
FSVS01000307
[FSVS] metagenome; soil
76
153
+
Ala
CGC
[ENA]
¢þ
>WENV180016668
FSVS01000460
[FSVS] metagenome; soil
96
22
-
Asp
GTC
[ENA]
¢þ
>WENV180016670
FSVS01000474
[FSVS] metagenome; soil
129
55
-
Ile2
CAT
[ENA]
¢þ
>WENV180016672
FSVS01000690
[FSVS] metagenome; soil
274
358
+
Tyr
GTA
[ENA]
¢þ
>WENV180016656
FSVS01000030
[FSVS] metagenome; soil
442
517
+
His
GTG
[ENA]
¢þ
>WENV180016667
FSVS01000450
[FSVS] metagenome; soil
1519
1446
-
Asn
GTT
[ENA]
¢þ
>WENV180016666
FSVS01000450
[FSVS] metagenome; soil
1622
1549
-
Asn
GTT
[ENA]
¢þ
>WENV180016662
FSVS01000375
[FSVS] metagenome; soil
1804
1728
-
Thr
CGT
[ENA]
¢þ
>WENV180016669
FSVS01000462
[FSVS] metagenome; soil
2184
2257
+
Ala
GGC
[ENA]
¢þ
>WENV180016677
FSVS01000854
[FSVS] metagenome; soil
2325
2397
+
Cys
GCA
[ENA]
¢þ
>WENV180016679
FSVS01000954
[FSVS] metagenome; soil
2411
2337
-
Phe
GAA
[ENA]
¢þ
>WENV180016678
FSVS01000954
[FSVS] metagenome; soil
2512
2438
-
Asp
GTC
[ENA]
¢þ
>WENV180016664
FSVS01000432
[FSVS] metagenome; soil
2561
2634
+
Thr
GGT
[ENA]
¢þ
>WENV180016673
FSVS01000690
[FSVS] metagenome; soil
2718
2791
+
Thr
GGT
[ENA]
¢þ
>WENV180016657
FSVS01000086
[FSVS] metagenome; soil
2834
2751
-
Leu
GAG
[ENA]
¢þ
>WENV180016676
FSVS01000793
[FSVS] metagenome; soil
2959
2876
-
Leu
GAG
[ENA]
¢þ
>WENV180016658
FSVS01000126
[FSVS] metagenome; soil
3292
3219
-
Leu
CAA
[ENA]
¢þ
>WENV180016671
FSVS01000544
[FSVS] metagenome; soil
3428
3502
+
fMet
CAT
[ENA]
¢þ
>WENV180016665
FSVS01000433
[FSVS] metagenome; soil
3992
3920
-
Trp
CCA
[ENA]
¢þ
>WENV180016661
FSVS01000332
[FSVS] metagenome; soil
4982
5055
+
Arg
CCT
[ENA]
¢þ
>WENV180016663
FSVS01000429
[FSVS] metagenome; soil
5082
5006
-
Thr
TGT
[ENA]
¢þ
>WENV180016675
FSVS01000740
[FSVS] metagenome; soil
5293
5219
-
Lys
CTT
[ENA]
¢þ
>WENV180016674
FSVS01000694
[FSVS] metagenome; soil
6840
6767
-
Arg
ACG
[ENA]
¢þ
>WENV180016660
FSVS01000321
[FSVS] metagenome; soil
8193
8266
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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