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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[FSVT] metagenome; soil
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016696
FSVT01000769
[FSVT] metagenome; soil
6
95
+
Ser
GCT
[ENA]
¢þ
>WENV180016681
FSVT01000022
[FSVT] metagenome; soil
21
92
+
Gly
CCC
[ENA]
¢þ
>WENV180016691
FSVT01000618
[FSVT] metagenome; soil
106
33
-
Asn
GTT
[ENA]
¢þ
>WENV180016685
FSVT01000141
[FSVT] metagenome; soil
197
270
+
Val
TAC
[ENA]
¢þ
>WENV180016694
FSVT01000684
[FSVT] metagenome; soil
844
919
+
Ala
GGC
[ENA]
¢þ
>WENV180016695
FSVT01000721
[FSVT] metagenome; soil
873
789
-
Leu
CAA
[ENA]
¢þ
>WENV180016693
FSVT01000674
[FSVT] metagenome; soil
1026
1112
+
Ser
GGA
[ENA]
¢þ
>WENV180016704
FSVT01001138
[FSVT] metagenome; soil
1286
1359
+
Gly
TCC
[ENA]
¢þ
>WENV180016702
FSVT01001028
[FSVT] metagenome; soil
1884
1811
-
Gly
CCC
[ENA]
¢þ
>WENV180016703
FSVT01001076
[FSVT] metagenome; soil
1902
1976
+
Gln
TTG
[ENA]
¢þ
>WENV180016692
FSVT01000623
[FSVT] metagenome; soil
1903
1820
-
Leu
CAA
[ENA]
¢þ
>WENV180016684
FSVT01000123
[FSVT] metagenome; soil
1989
2062
+
Lys
CTT
[ENA]
¢þ
>WENV180016710
FSVT01001364
[FSVT] metagenome; soil
2115
2043
-
Thr
TGT
[ENA]
¢þ
>WENV180016709
FSVT01001354
[FSVT] metagenome; soil
2318
2245
-
Asn
GTT
[ENA]
¢þ
>WENV180016707
FSVT01001248
[FSVT] metagenome; soil
2795
2720
-
Arg
TCT
[ENA]
¢þ
>WENV180016700
FSVT01000891
[FSVT] metagenome; soil
3125
3051
-
Ile2
CAT
[ENA]
¢þ
>WENV180016698
FSVT01000828
[FSVT] metagenome; soil
3128
3054
-
fMet
CAT
[ENA]
¢þ
>WENV180016701
FSVT01001016
[FSVT] metagenome; soil
3144
3228
+
Leu
TAG
[ENA]
¢þ
>WENV180016680
FSVT01000021
[FSVT] metagenome; soil
3267
3193
-
Leu
TAA
[ENA]
¢þ
>WENV180016706
FSVT01001207
[FSVT] metagenome; soil
3428
3353
-
Leu
TAA
[ENA]
¢þ
>WENV180016683
FSVT01000057
[FSVT] metagenome; soil
3471
3398
-
Trp
CCA
[ENA]
¢þ
>WENV180016682
FSVT01000033
[FSVT] metagenome; soil
3479
3404
-
Thr
CGT
[ENA]
¢þ
>WENV180016705
FSVT01001190
[FSVT] metagenome; soil
3643
3716
+
Asn
GTT
[ENA]
¢þ
>WENV180016686
FSVT01000220
[FSVT] metagenome; soil
4198
4274
+
Thr
TGT
[ENA]
¢þ
>WENV180016699
FSVT01000851
[FSVT] metagenome; soil
4937
4862
-
Val
CAC
[ENA]
¢þ
>WENV180016697
FSVT01000769
[FSVT] metagenome; soil
5212
5285
+
Arg
ACG
[ENA]
¢þ
>WENV180016687
FSVT01000223
[FSVT] metagenome; soil
5550
5624
+
Ile2
CAT
[ENA]
¢þ
>WENV180016708
FSVT01001302
[FSVT] metagenome; soil
5835
5910
+
Arg
ACG
[ENA]
¢þ
>WENV180016689
FSVT01000295
[FSVT] metagenome; soil
9346
9272
-
Asp
GTC
[ENA]
¢þ
>WENV180016688
FSVT01000295
[FSVT] metagenome; soil
9447
9374
-
Glu
TTC
[ENA]
¢þ
>WENV180016690
FSVT01000349
[FSVT] metagenome; soil
10463
10389
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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