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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSVX] metagenome; soil
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016871
FSVX01001536
[FSVX] metagenome; soil
11
86
+
Lys
CTT
[ENA]
¢þ
>WENV180016844
FSVX01000394
[FSVX] metagenome; soil
12
99
+
Leu
TAA
[ENA]
¢þ
>WENV180016867
FSVX01001301
[FSVX] metagenome; soil
18
94
+
Met
CAT
[ENA]
¢þ
>WENV180016852
FSVX01000566
[FSVX] metagenome; soil
32
108
+
Ile2
CAT
[ENA]
¢þ
>WENV180016863
FSVX01001152
[FSVX] metagenome; soil
304
379
+
Val
TAC
[ENA]
¢þ
>WENV180016858
FSVX01000737
[FSVX] metagenome; soil
549
476
-
Asn
GTT
[ENA]
¢þ
>WENV180016855
FSVX01000608
[FSVX] metagenome; soil
1008
1084
+
Pro
TGG
[ENA]
¢þ
>WENV180016851
FSVX01000517
[FSVX] metagenome; soil
1245
1154
-
Leu
TAA
[ENA]
¢þ
>WENV180016865
FSVX01001236
[FSVX] metagenome; soil
1361
1285
-
fMet
CAT
[ENA]
¢þ
>WENV180016853
FSVX01000567
[FSVX] metagenome; soil
1536
1611
+
Phe
GAA
[ENA]
¢þ
>WENV180016859
FSVX01000767
[FSVX] metagenome; soil
1723
1646
-
Pro
GGG
[ENA]
¢þ
>WENV180016870
FSVX01001496
[FSVX] metagenome; soil
1846
1770
-
Arg
CCG
[ENA]
¢þ
>WENV180016847
FSVX01000489
[FSVX] metagenome; soil
1947
2024
+
Arg
ACG
[ENA]
¢þ
>WENV180016848
FSVX01000489
[FSVX] metagenome; soil
2052
2136
+
Leu
CAG
[ENA]
¢þ
>WENV180016849
FSVX01000489
[FSVX] metagenome; soil
2146
2220
+
Gln
TTG
[ENA]
¢þ
>WENV180016850
FSVX01000489
[FSVX] metagenome; soil
2228
2303
+
Arg
CCG
[ENA]
¢þ
>WENV180016866
FSVX01001292
[FSVX] metagenome; soil
2315
2390
+
Ala
CGC
[ENA]
¢þ
>WENV180016843
FSVX01000360
[FSVX] metagenome; soil
2422
2349
-
Gly
CCC
[ENA]
¢þ
>WENV180016864
FSVX01001152
[FSVX] metagenome; soil
2444
2519
+
His
GTG
[ENA]
¢þ
>WENV180016845
FSVX01000454
[FSVX] metagenome; soil
2564
2490
-
Val
CAC
[ENA]
¢þ
>WENV180016856
FSVX01000634
[FSVX] metagenome; soil
2730
2805
+
Arg
ACG
[ENA]
¢þ
>WENV180016860
FSVX01000806
[FSVX] metagenome; soil
3035
3112
+
Arg
ACG
[ENA]
¢þ
>WENV180016854
FSVX01000585
[FSVX] metagenome; soil
3103
3027
-
Met
CAT
[ENA]
¢þ
>WENV180016861
FSVX01000806
[FSVX] metagenome; soil
3121
3196
+
Pro
TGG
[ENA]
¢þ
>WENV180016842
FSVX01000357
[FSVX] metagenome; soil
3185
3109
-
Pro
TGG
[ENA]
¢þ
>WENV180016862
FSVX01000806
[FSVX] metagenome; soil
3208
3292
+
Leu
CAG
[ENA]
¢þ
>WENV180016846
FSVX01000459
[FSVX] metagenome; soil
4551
4464
-
Leu
TAA
[ENA]
¢þ
>WENV180016868
FSVX01001327
[FSVX] metagenome; soil
5275
5199
-
Pro
GGG
[ENA]
¢þ
>WENV180016857
FSVX01000692
[FSVX] metagenome; soil
6151
6075
-
Ile2
CAT
[ENA]
¢þ
>WENV180016869
FSVX01001368
[FSVX] metagenome; soil
7895
7799
-
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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