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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSVZ] metagenome; soil
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016907
FSVZ01000103
[FSVZ] metagenome; soil
77
5
-
Lys
CTT
[ENA]
¢þ
>WENV180016900
FSVZ01000068
[FSVZ] metagenome; soil
162
89
-
Val
TAC
[ENA]
¢þ
>WENV180016875
FSVZ01000012
[FSVZ] metagenome; soil
1065
980
-
Leu
CAA
[ENA]
¢þ
>WENV180016894
FSVZ01000059
[FSVZ] metagenome; soil
1178
1103
-
Ala
GGC
[ENA]
¢þ
>WENV180016874
FSVZ01000012
[FSVZ] metagenome; soil
1678
1764
+
Leu
TAG
[ENA]
¢þ
>WENV180016905
FSVZ01000094
[FSVZ] metagenome; soil
2080
2009
-
Arg
CCT
[ENA]
¢þ
>WENV180016901
FSVZ01000071
[FSVZ] metagenome; soil
2254
2328
+
Arg
ACG
[ENA]
¢þ
>WENV180016885
FSVZ01000049
[FSVZ] metagenome; soil
2369
2278
-
Ser
GGA
[ENA]
¢þ
>WENV180016882
FSVZ01000033
[FSVZ] metagenome; soil
2675
2602
-
His
GTG
[ENA]
¢þ
>WENV180016897
FSVZ01000062
[FSVZ] metagenome; soil
3148
3075
-
fMet
CAT
[ENA]
¢þ
>WENV180016876
FSVZ01000027
[FSVZ] metagenome; soil
3410
3335
-
Pro
CGG
[ENA]
¢þ
>WENV180016889
FSVZ01000051
[FSVZ] metagenome; soil
5084
5012
-
Leu
TAA
[ENA]
¢þ
>WENV180016898
FSVZ01000063
[FSVZ] metagenome; soil
5775
5849
+
Ile
GAT
[ENA]
¢þ
>WENV180016896
FSVZ01000062
[FSVZ] metagenome; soil
6056
5973
-
Leu
TAA
[ENA]
¢þ
>WENV180016899
FSVZ01000068
[FSVZ] metagenome; soil
6212
6287
+
Asp
GTC
[ENA]
¢þ
>WENV180016881
FSVZ01000033
[FSVZ] metagenome; soil
7012
6935
-
Arg
TCT
[ENA]
¢þ
>WENV180016895
FSVZ01000061
[FSVZ] metagenome; soil
7418
7490
+
Thr
TGT
[ENA]
¢þ
>WENV180016903
FSVZ01000082
[FSVZ] metagenome; soil
8182
8111
-
Gln
TTG
[ENA]
¢þ
>WENV180016911
FSVZ01000128
[FSVZ] metagenome; soil
9188
9116
-
Lys
TTT
[ENA]
¢þ
>WENV180016883
FSVZ01000039
[FSVZ] metagenome; soil
10529
10600
+
Val
CAC
[ENA]
¢þ
>WENV180016890
FSVZ01000052
[FSVZ] metagenome; soil
12595
12676
+
Tyr
GTA
[ENA]
¢þ
>WENV180016904
FSVZ01000086
[FSVZ] metagenome; soil
12674
12746
+
Phe
GAA
[ENA]
¢þ
>WENV180016906
FSVZ01000095
[FSVZ] metagenome; soil
13366
13273
-
Ser
CGA
[ENA]
¢þ
>WENV180016880
FSVZ01000033
[FSVZ] metagenome; soil
14561
14490
-
Trp
CCA
[ENA]
¢þ
>WENV180016891
FSVZ01000052
[FSVZ] metagenome; soil
16478
16550
+
Thr
GGT
[ENA]
¢þ
>WENV180016902
FSVZ01000079
[FSVZ] metagenome; soil
17099
17175
+
Pro
TGG
[ENA]
¢þ
>WENV180016909
FSVZ01000119
[FSVZ] metagenome; soil
18641
18713
+
Gly
CCC
[ENA]
¢þ
>WENV180016884
FSVZ01000040
[FSVZ] metagenome; soil
20699
20627
-
Gln
CTG
[ENA]
¢þ
>WENV180016893
FSVZ01000059
[FSVZ] metagenome; soil
22078
22008
-
Gly
TCC
[ENA]
¢þ
>WENV180016892
FSVZ01000059
[FSVZ] metagenome; soil
22445
22518
+
Pro
GGG
[ENA]
¢þ
>WENV180016877
FSVZ01000032
[FSVZ] metagenome; soil
22889
22961
+
Thr
CGT
[ENA]
¢þ
>WENV180016910
FSVZ01000123
[FSVZ] metagenome; soil
32180
32253
+
Met
CAT
[ENA]
¢þ
>WENV180016886
FSVZ01000050
[FSVZ] metagenome; soil
35363
35436
+
Asn
GTT
[ENA]
¢þ
>WENV180016887
FSVZ01000050
[FSVZ] metagenome; soil
39583
39656
+
Ile2
CAT
[ENA]
¢þ
>WENV180016878
FSVZ01000032
[FSVZ] metagenome; soil
50620
50711
+
Ser
TGA
[ENA]
¢þ
>WENV180016879
FSVZ01000032
[FSVZ] metagenome; soil
51343
51431
+
Ser
GCT
[ENA]
¢þ
>WENV180016908
FSVZ01000115
[FSVZ] metagenome; soil
58086
58014
-
Ala
CGC
[ENA]
¢þ
>WENV180016888
FSVZ01000050
[FSVZ] metagenome; soil
88744
88671
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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