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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSWB] metagenome; soil
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016924
FSWB01000352
[FSWB] metagenome; soil
7
94
+
Ser
CGA
[ENA]
¢þ
>WENV180016913
FSWB01000067
[FSWB] metagenome; soil
10
86
+
Pro
GGG
[ENA]
¢þ
>WENV180016927
FSWB01000417
[FSWB] metagenome; soil
12
99
+
Ser
TGA
[ENA]
¢þ
>WENV180016918
FSWB01000192
[FSWB] metagenome; soil
15
99
+
Leu
CAA
[ENA]
¢þ
>WENV180016922
FSWB01000316
[FSWB] metagenome; soil
23
98
+
Phe
GAA
[ENA]
¢þ
>WENV180016921
FSWB01000285
[FSWB] metagenome; soil
23
99
+
Met
CAT
[ENA]
¢þ
>WENV180016928
FSWB01000442
[FSWB] metagenome; soil
24
99
+
Asn
GTT
[ENA]
¢þ
>WENV180016929
FSWB01000449
[FSWB] metagenome; soil
60
134
+
Val
CAC
[ENA]
¢þ
>WENV180016915
FSWB01000120
[FSWB] metagenome; soil
598
673
+
Phe
GAA
[ENA]
¢þ
>WENV180016914
FSWB01000093
[FSWB] metagenome; soil
2810
2734
-
Asp
GTC
[ENA]
¢þ
>WENV180016926
FSWB01000381
[FSWB] metagenome; soil
2974
2898
-
Arg
CCG
[ENA]
¢þ
>WENV180016919
FSWB01000208
[FSWB] metagenome; soil
3375
3299
-
Arg
TCT
[ENA]
¢þ
>WENV180016917
FSWB01000183
[FSWB] metagenome; soil
3625
3549
-
fMet
CAT
[ENA]
¢þ
>WENV180016916
FSWB01000123
[FSWB] metagenome; soil
4228
4141
-
Leu
CAA
[ENA]
¢þ
>WENV180016925
FSWB01000370
[FSWB] metagenome; soil
4826
4751
-
Ala
CGC
[ENA]
¢þ
>WENV180016933
FSWB01000570
[FSWB] metagenome; soil
4961
4886
-
Asn
GTT
[ENA]
¢þ
>WENV180016920
FSWB01000273
[FSWB] metagenome; soil
5728
5652
-
Pro
CGG
[ENA]
¢þ
>WENV180016932
FSWB01000566
[FSWB] metagenome; soil
5814
5739
-
Phe
GAA
[ENA]
¢þ
>WENV180016931
FSWB01000541
[FSWB] metagenome; soil
10076
10151
+
Ala
CGC
[ENA]
¢þ
>WENV180016923
FSWB01000335
[FSWB] metagenome; soil
16414
16489
+
Gly
TCC
[ENA]
¢þ
>WENV180016912
FSWB01000022
[FSWB] metagenome; soil
19121
19046
-
Phe
GAA
[ENA]
¢þ
>WENV180016934
FSWB01000584
[FSWB] metagenome; soil
31026
31110
+
Leu
CAA
[ENA]
¢þ
>WENV180016930
FSWB01000539
[FSWB] metagenome; soil
42763
42687
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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