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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSWI] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016956
FSWI01000263
[FSWI] metagenome; soil
264
348
+
Leu
CAA
[ENA]
¢þ
>WENV180016963
FSWI01000565
[FSWI] metagenome; soil
793
865
+
Val
GAC
[ENA]
¢þ
>WENV180016962
FSWI01000531
[FSWI] metagenome; soil
1037
961
-
Arg
TCT
[ENA]
¢þ
>WENV180016961
FSWI01000531
[FSWI] metagenome; soil
1118
1043
-
Pro
TGG
[ENA]
¢þ
>WENV180016958
FSWI01000531
[FSWI] metagenome; soil
1279
1354
+
His
GTG
[ENA]
¢þ
>WENV180016959
FSWI01000531
[FSWI] metagenome; soil
1410
1484
+
Arg
TCG
[ENA]
¢þ
>WENV180016960
FSWI01000531
[FSWI] metagenome; soil
1498
1573
+
Lys
CTT
[ENA]
¢þ
>WENV180016957
FSWI01000321
[FSWI] metagenome; soil
2597
2682
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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