This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FSWJ] metagenome; soil
HIT:
98 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016998
FSWJ01000375
[FSWJ] metagenome; soil
11
94
+
Leu
GAG
[ENA]
¢þ
>WENV180017058
FSWJ01001038
[FSWJ] metagenome; soil
14
98
+
Leu
CAA
[ENA]
¢þ
>WENV180017001
FSWJ01000394
[FSWJ] metagenome; soil
26
99
+
Ala
GGC
[ENA]
¢þ
>WENV180017008
FSWJ01000437
[FSWJ] metagenome; soil
27
99
+
Gly
CCC
[ENA]
¢þ
>WENV180016965
FSWJ01000021
[FSWJ] metagenome; soil
75
1
-
Asp
GTC
[ENA]
¢þ
>WENV180017017
FSWJ01000472
[FSWJ] metagenome; soil
84
11
-
Gly
GCC
[ENA]
¢þ
>WENV180016995
FSWJ01000314
[FSWJ] metagenome; soil
91
17
-
Pro
CGG
[ENA]
¢þ
>WENV180017049
FSWJ01000894
[FSWJ] metagenome; soil
132
58
-
Thr
TGT
[ENA]
¢þ
>WENV180017004
FSWJ01000401
[FSWJ] metagenome; soil
165
82
-
Leu
CAG
[ENA]
¢þ
>WENV180017038
FSWJ01000693
[FSWJ] metagenome; soil
171
98
-
Thr
CGT
[ENA]
¢þ
>WENV180016964
FSWJ01000021
[FSWJ] metagenome; soil
175
102
-
Glu
TTC
[ENA]
¢þ
>WENV180016985
FSWJ01000171
[FSWJ] metagenome; soil
176
102
-
Pro
GGG
[ENA]
¢þ
>WENV180017032
FSWJ01000638
[FSWJ] metagenome; soil
204
280
+
Pro
CGG
[ENA]
¢þ
>WENV180017037
FSWJ01000692
[FSWJ] metagenome; soil
217
143
-
Trp
CCA
[ENA]
¢þ
>WENV180017047
FSWJ01000820
[FSWJ] metagenome; soil
240
315
+
Leu
CAA
[ENA]
¢þ
>WENV180017035
FSWJ01000677
[FSWJ] metagenome; soil
417
328
-
Ser
GCT
[ENA]
¢þ
>WENV180017019
FSWJ01000481
[FSWJ] metagenome; soil
449
376
-
Lys
CTT
[ENA]
¢þ
>WENV180017026
FSWJ01000567
[FSWJ] metagenome; soil
696
620
-
Ala
GGC
[ENA]
¢þ
>WENV180016988
FSWJ01000192
[FSWJ] metagenome; soil
998
915
-
Leu
CAG
[ENA]
¢þ
>WENV180017009
FSWJ01000441
[FSWJ] metagenome; soil
1019
947
-
Gln
TTG
[ENA]
¢þ
>WENV180017016
FSWJ01000472
[FSWJ] metagenome; soil
1059
1135
+
Val
CAC
[ENA]
¢þ
>WENV180017050
FSWJ01000914
[FSWJ] metagenome; soil
1073
1001
-
Arg
CCT
[ENA]
¢þ
>WENV180017033
FSWJ01000668
[FSWJ] metagenome; soil
1085
1012
-
Val
TAC
[ENA]
¢þ
>WENV180016979
FSWJ01000143
[FSWJ] metagenome; soil
1110
1037
-
Gln
TTG
[ENA]
¢þ
>WENV180017036
FSWJ01000680
[FSWJ] metagenome; soil
1170
1096
-
fMet
CAT
[ENA]
¢þ
>WENV180016994
FSWJ01000311
[FSWJ] metagenome; soil
1314
1240
-
Arg
TCT
[ENA]
¢þ
>WENV180017041
FSWJ01000711
[FSWJ] metagenome; soil
1592
1666
+
Pro
TGG
[ENA]
¢þ
>WENV180017006
FSWJ01000415
[FSWJ] metagenome; soil
1704
1630
-
Pro
GGG
[ENA]
¢þ
>WENV180017046
FSWJ01000782
[FSWJ] metagenome; soil
1860
1786
-
Arg
CCT
[ENA]
¢þ
>WENV180016970
FSWJ01000083
[FSWJ] metagenome; soil
1951
2040
+
Ser
CGA
[ENA]
¢þ
>WENV180017055
FSWJ01000976
[FSWJ] metagenome; soil
2200
2273
+
Arg
TCT
[ENA]
¢þ
>WENV180017043
FSWJ01000745
[FSWJ] metagenome; soil
2395
2320
-
Leu
TAG
[ENA]
¢þ
>WENV180017015
FSWJ01000470
[FSWJ] metagenome; soil
2395
2322
-
Thr
TGT
[ENA]
¢þ
>WENV180017012
FSWJ01000453
[FSWJ] metagenome; soil
2458
2385
-
Gly
CCC
[ENA]
¢þ
>WENV180017030
FSWJ01000610
[FSWJ] metagenome; soil
2631
2557
-
Val
GAC
[ENA]
¢þ
>WENV180016993
FSWJ01000262
[FSWJ] metagenome; soil
2677
2759
+
Tyr
GTA
[ENA]
¢þ
>WENV180017061
FSWJ01001107
[FSWJ] metagenome; soil
2690
2776
+
Leu
GAG
[ENA]
¢þ
>WENV180017027
FSWJ01000572
[FSWJ] metagenome; soil
2691
2620
-
Gly
TCC
[ENA]
¢þ
>WENV180017029
FSWJ01000610
[FSWJ] metagenome; soil
2744
2673
-
Cys
GCA
[ENA]
¢þ
>WENV180017039
FSWJ01000698
[FSWJ] metagenome; soil
2773
2700
-
Asn
GTT
[ENA]
¢þ
>WENV180017028
FSWJ01000584
[FSWJ] metagenome; soil
2814
2888
+
Ala
GGC
[ENA]
¢þ
>WENV180017040
FSWJ01000699
[FSWJ] metagenome; soil
2938
3011
+
His
GTG
[ENA]
¢þ
>WENV180016966
FSWJ01000046
[FSWJ] metagenome; soil
2958
3031
+
Ala
GGC
[ENA]
¢þ
>WENV180017059
FSWJ01001047
[FSWJ] metagenome; soil
3016
2927
-
Ser
CGA
[ENA]
¢þ
>WENV180017048
FSWJ01000864
[FSWJ] metagenome; soil
3033
3109
+
Pro
CGG
[ENA]
¢þ
>WENV180016984
FSWJ01000161
[FSWJ] metagenome; soil
3040
2965
-
Phe
GAA
[ENA]
¢þ
>WENV180017013
FSWJ01000454
[FSWJ] metagenome; soil
3061
3147
+
Leu
CAG
[ENA]
¢þ
>WENV180017018
FSWJ01000476
[FSWJ] metagenome; soil
3070
2998
-
Gln
TTG
[ENA]
¢þ
>WENV180016983
FSWJ01000161
[FSWJ] metagenome; soil
3130
3056
-
Asp
GTC
[ENA]
¢þ
>WENV180017022
FSWJ01000519
[FSWJ] metagenome; soil
3202
3276
+
Ala
CGC
[ENA]
¢þ
>WENV180016982
FSWJ01000161
[FSWJ] metagenome; soil
3241
3168
-
Glu
TTC
[ENA]
¢þ
>WENV180016989
FSWJ01000218
[FSWJ] metagenome; soil
3309
3228
-
Leu
TAG
[ENA]
¢þ
>WENV180017034
FSWJ01000677
[FSWJ] metagenome; soil
3488
3403
-
Ser
TGA
[ENA]
¢þ
>WENV180017031
FSWJ01000622
[FSWJ] metagenome; soil
3545
3469
-
Pro
CGG
[ENA]
¢þ
>WENV180017052
FSWJ01000941
[FSWJ] metagenome; soil
3611
3683
+
Gln
CTG
[ENA]
¢þ
>WENV180017053
FSWJ01000941
[FSWJ] metagenome; soil
3728
3801
+
Glu
CTC
[ENA]
¢þ
>WENV180017005
FSWJ01000402
[FSWJ] metagenome; soil
4767
4695
-
Gln
CTG
[ENA]
¢þ
>WENV180016992
FSWJ01000251
[FSWJ] metagenome; soil
4969
5044
+
Thr
CGT
[ENA]
¢þ
>WENV180016971
FSWJ01000095
[FSWJ] metagenome; soil
5058
5133
+
Leu
TAA
[ENA]
¢þ
>WENV180017060
FSWJ01001053
[FSWJ] metagenome; soil
5196
5269
+
Thr
TGT
[ENA]
¢þ
>WENV180017023
FSWJ01000531
[FSWJ] metagenome; soil
6270
6345
+
Val
TAC
[ENA]
¢þ
>WENV180016968
FSWJ01000079
[FSWJ] metagenome; soil
6673
6747
+
Lys
TTT
[ENA]
¢þ
>WENV180016977
FSWJ01000124
[FSWJ] metagenome; soil
6754
6681
-
Asn
GTT
[ENA]
¢þ
>WENV180016981
FSWJ01000161
[FSWJ] metagenome; soil
6917
6991
+
Lys
TTT
[ENA]
¢þ
>WENV180017054
FSWJ01000966
[FSWJ] metagenome; soil
7191
7276
+
Ser
TGA
[ENA]
¢þ
>WENV180017021
FSWJ01000517
[FSWJ] metagenome; soil
7245
7172
-
Ala
TGC
[ENA]
¢þ
>WENV180017020
FSWJ01000517
[FSWJ] metagenome; soil
7407
7333
-
Ile
GAT
[ENA]
¢þ
>WENV180016999
FSWJ01000379
[FSWJ] metagenome; soil
8409
8335
-
Lys
CTT
[ENA]
¢þ
>WENV180016980
FSWJ01000156
[FSWJ] metagenome; soil
8473
8547
+
Lys
CTT
[ENA]
¢þ
>WENV180016978
FSWJ01000129
[FSWJ] metagenome; soil
8788
8712
-
Ile2
CAT
[ENA]
¢þ
>WENV180017057
FSWJ01000993
[FSWJ] metagenome; soil
10335
10262
-
Gly
TCC
[ENA]
¢þ
>WENV180017056
FSWJ01000993
[FSWJ] metagenome; soil
10370
10443
+
Pro
TGG
[ENA]
¢þ
>WENV180017051
FSWJ01000934
[FSWJ] metagenome; soil
10680
10753
+
Arg
ACG
[ENA]
¢þ
>WENV180016967
FSWJ01000048
[FSWJ] metagenome; soil
12321
12246
-
His
GTG
[ENA]
¢þ
>WENV180016987
FSWJ01000192
[FSWJ] metagenome; soil
17040
16967
-
Ala
TGC
[ENA]
¢þ
>WENV180016986
FSWJ01000192
[FSWJ] metagenome; soil
17343
17268
-
Ile
GAT
[ENA]
¢þ
>WENV180017007
FSWJ01000429
[FSWJ] metagenome; soil
18655
18583
-
Gln
TTG
[ENA]
¢þ
>WENV180017045
FSWJ01000767
[FSWJ] metagenome; soil
20370
20297
-
Arg
TCT
[ENA]
¢þ
>WENV180016996
FSWJ01000334
[FSWJ] metagenome; soil
20806
20733
-
Trp
CCA
[ENA]
¢þ
>WENV180017044
FSWJ01000767
[FSWJ] metagenome; soil
21928
22003
+
His
GTG
[ENA]
¢þ
>WENV180017010
FSWJ01000442
[FSWJ] metagenome; soil
22182
22256
+
Thr
TGT
[ENA]
¢þ
>WENV180017042
FSWJ01000736
[FSWJ] metagenome; soil
28297
28224
-
Gly
CCC
[ENA]
¢þ
>WENV180016969
FSWJ01000081
[FSWJ] metagenome; soil
29225
29300
+
Ala
CGC
[ENA]
¢þ
>WENV180017003
FSWJ01000398
[FSWJ] metagenome; soil
30028
29943
-
Ser
GGA
[ENA]
¢þ
>WENV180017014
FSWJ01000460
[FSWJ] metagenome; soil
30723
30649
-
Leu
TAA
[ENA]
¢þ
>WENV180016976
FSWJ01000120
[FSWJ] metagenome; soil
31243
31171
-
Val
GAC
[ENA]
¢þ
>WENV180016975
FSWJ01000120
[FSWJ] metagenome; soil
31342
31271
-
Cys
GCA
[ENA]
¢þ
>WENV180016974
FSWJ01000120
[FSWJ] metagenome; soil
31457
31385
-
Gly
GCC
[ENA]
¢þ
>WENV180016973
FSWJ01000120
[FSWJ] metagenome; soil
32034
32109
+
Val
CAC
[ENA]
¢þ
>WENV180017000
FSWJ01000385
[FSWJ] metagenome; soil
33846
33931
+
Leu
GAG
[ENA]
¢þ
>WENV180016972
FSWJ01000118
[FSWJ] metagenome; soil
35033
34950
-
Leu
CAA
[ENA]
¢þ
>WENV180016997
FSWJ01000343
[FSWJ] metagenome; soil
36973
37049
+
fMet
CAT
[ENA]
¢þ
>WENV180016990
FSWJ01000219
[FSWJ] metagenome; soil
45875
45959
+
Tyr
GTA
[ENA]
¢þ
>WENV180017025
FSWJ01000567
[FSWJ] metagenome; soil
49907
49833
-
Pro
TGG
[ENA]
¢þ
>WENV180017024
FSWJ01000567
[FSWJ] metagenome; soil
51943
52015
+
Gly
TCC
[ENA]
¢þ
>WENV180016991
FSWJ01000219
[FSWJ] metagenome; soil
52105
52179
+
Met
CAT
[ENA]
¢þ
>WENV180017002
FSWJ01000398
[FSWJ] metagenome; soil
73348
73272
-
Pro
CGG
[ENA]
¢þ
>WENV180017011
FSWJ01000442
[FSWJ] metagenome; soil
84930
85004
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK