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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSWK] metagenome; soil
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017062
FSWK01000169
[FSWK] metagenome; soil
623
699
+
Pro
TGG
[ENA]
¢þ
>WENV180017065
FSWK01000418
[FSWK] metagenome; soil
662
587
-
Met
CAT
[ENA]
¢þ
>WENV180017075
FSWK01000798
[FSWK] metagenome; soil
902
828
-
Lys
TTT
[ENA]
¢þ
>WENV180017070
FSWK01000655
[FSWK] metagenome; soil
1377
1288
-
Leu
TAA
[ENA]
¢þ
>WENV180017063
FSWK01000261
[FSWK] metagenome; soil
1560
1636
+
Pro
TGG
[ENA]
¢þ
>WENV180017069
FSWK01000626
[FSWK] metagenome; soil
2513
2588
+
Cys
GCA
[ENA]
¢þ
>WENV180017066
FSWK01000421
[FSWK] metagenome; soil
3013
3107
+
SeC
TCA
[ENA]
¢þ
>WENV180017068
FSWK01000475
[FSWK] metagenome; soil
3490
3415
-
Glu
CTC
[ENA]
¢þ
>WENV180017067
FSWK01000475
[FSWK] metagenome; soil
3620
3547
-
Gln
CTG
[ENA]
¢þ
>WENV180017064
FSWK01000367
[FSWK] metagenome; soil
3760
3686
-
Arg
CCT
[ENA]
¢þ
>WENV180017073
FSWK01000785
[FSWK] metagenome; soil
3955
4039
+
Leu
GAG
[ENA]
¢þ
>WENV180017072
FSWK01000768
[FSWK] metagenome; soil
6934
6861
-
Cys
GCA
[ENA]
¢þ
>WENV180017074
FSWK01000791
[FSWK] metagenome; soil
10178
10264
+
Leu
CAG
[ENA]
¢þ
>WENV180017071
FSWK01000693
[FSWK] metagenome; soil
13543
13615
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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