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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FSWM] metagenome; soil
HIT:
92 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017097
FSWM01000315
[FSWM] metagenome; soil
7
93
+
Leu
CAG
[ENA]
¢þ
>WENV180017092
FSWM01000271
[FSWM] metagenome; soil
9
85
+
Pro
CGG
[ENA]
¢þ
>WENV180017129
FSWM01000781
[FSWM] metagenome; soil
9
85
+
Pro
CGG
[ENA]
¢þ
>WENV180017121
FSWM01000630
[FSWM] metagenome; soil
10
99
+
Ser
TGA
[ENA]
¢þ
>WENV180017169
FSWM01001240
[FSWM] metagenome; soil
13
88
+
Ala
GGC
[ENA]
¢þ
>WENV180017115
FSWM01000559
[FSWM] metagenome; soil
18
94
+
Arg
ACG
[ENA]
¢þ
>WENV180017156
FSWM01001118
[FSWM] metagenome; soil
75
1
-
Phe
GAA
[ENA]
¢þ
>WENV180017162
FSWM01001187
[FSWM] metagenome; soil
87
12
-
Ala
GGC
[ENA]
¢þ
>WENV180017168
FSWM01001226
[FSWM] metagenome; soil
88
14
-
Glu
TTC
[ENA]
¢þ
>WENV180017096
FSWM01000298
[FSWM] metagenome; soil
93
7
-
Leu
CAG
[ENA]
¢þ
>WENV180017137
FSWM01000807
[FSWM] metagenome; soil
185
261
+
Pro
GGG
[ENA]
¢þ
>WENV180017152
FSWM01001047
[FSWM] metagenome; soil
211
138
-
Gly
TCC
[ENA]
¢þ
>WENV180017122
FSWM01000657
[FSWM] metagenome; soil
277
202
-
Thr
TGT
[ENA]
¢þ
>WENV180017170
FSWM01001241
[FSWM] metagenome; soil
396
484
+
Leu
TAA
[ENA]
¢þ
>WENV180017151
FSWM01001047
[FSWM] metagenome; soil
447
362
-
Tyr
GTA
[ENA]
¢þ
>WENV180017147
FSWM01000995
[FSWM] metagenome; soil
453
537
+
Leu
CAA
[ENA]
¢þ
>WENV180017167
FSWM01001222
[FSWM] metagenome; soil
464
540
+
fMet
CAT
[ENA]
¢þ
>WENV180017149
FSWM01001040
[FSWM] metagenome; soil
468
544
+
fMet
CAT
[ENA]
¢þ
>WENV180017087
FSWM01000236
[FSWM] metagenome; soil
613
540
-
Cys
GCA
[ENA]
¢þ
>WENV180017118
FSWM01000577
[FSWM] metagenome; soil
662
589
-
Gly
TCC
[ENA]
¢þ
>WENV180017139
FSWM01000839
[FSWM] metagenome; soil
738
649
-
Ser
TGA
[ENA]
¢þ
>WENV180017117
FSWM01000577
[FSWM] metagenome; soil
819
734
-
Tyr
GTA
[ENA]
¢þ
>WENV180017128
FSWM01000774
[FSWM] metagenome; soil
1342
1416
+
Val
CAC
[ENA]
¢þ
>WENV180017111
FSWM01000397
[FSWM] metagenome; soil
1352
1426
+
Gly
CCC
[ENA]
¢þ
>WENV180017171
FSWM01001264
[FSWM] metagenome; soil
1408
1483
+
Ala
GGC
[ENA]
¢þ
>WENV180017113
FSWM01000410
[FSWM] metagenome; soil
1703
1778
+
Ile2
CAT
[ENA]
¢þ
>WENV180017146
FSWM01000976
[FSWM] metagenome; soil
2128
2203
+
Thr
TGT
[ENA]
¢þ
>WENV180017154
FSWM01001059
[FSWM] metagenome; soil
2268
2344
+
Arg
CCT
[ENA]
¢þ
>WENV180017165
FSWM01001218
[FSWM] metagenome; soil
2456
2532
+
Val
TAC
[ENA]
¢þ
>WENV180017081
FSWM01000135
[FSWM] metagenome; soil
2648
2572
-
Asp
GTC
[ENA]
¢þ
>WENV180017080
FSWM01000129
[FSWM] metagenome; soil
2652
2576
-
Met
CAT
[ENA]
¢þ
>WENV180017088
FSWM01000244
[FSWM] metagenome; soil
2993
2917
-
Arg
CCG
[ENA]
¢þ
>WENV180017157
FSWM01001138
[FSWM] metagenome; soil
3045
2961
-
Leu
GAG
[ENA]
¢þ
>WENV180017148
FSWM01000997
[FSWM] metagenome; soil
3145
3071
-
Met
CAT
[ENA]
¢þ
>WENV180017140
FSWM01000868
[FSWM] metagenome; soil
3284
3359
+
Asn
GTT
[ENA]
¢þ
>WENV180017090
FSWM01000259
[FSWM] metagenome; soil
3391
3466
+
Thr
CGT
[ENA]
¢þ
>WENV180017145
FSWM01000932
[FSWM] metagenome; soil
3441
3366
-
Thr
CGT
[ENA]
¢þ
>WENV180017141
FSWM01000872
[FSWM] metagenome; soil
3665
3749
+
Leu
TAG
[ENA]
¢þ
>WENV180017086
FSWM01000235
[FSWM] metagenome; soil
4112
4186
+
Val
GAC
[ENA]
¢þ
>WENV180017126
FSWM01000701
[FSWM] metagenome; soil
5291
5202
-
Ser
CGA
[ENA]
¢þ
>WENV180017082
FSWM01000164
[FSWM] metagenome; soil
5790
5715
-
Thr
CGT
[ENA]
¢þ
>WENV180017130
FSWM01000783
[FSWM] metagenome; soil
5962
5870
-
Ser
GCT
[ENA]
¢þ
>WENV180017116
FSWM01000577
[FSWM] metagenome; soil
6046
6121
+
Thr
TGT
[ENA]
¢þ
>WENV180017166
FSWM01001218
[FSWM] metagenome; soil
6057
5981
-
Asp
GTC
[ENA]
¢þ
>WENV180017155
FSWM01001077
[FSWM] metagenome; soil
6183
6107
-
His
GTG
[ENA]
¢þ
>WENV180017109
FSWM01000357
[FSWM] metagenome; soil
6329
6255
-
Gly
GCC
[ENA]
¢þ
>WENV180017124
FSWM01000673
[FSWM] metagenome; soil
6543
6467
-
Arg
CCT
[ENA]
¢þ
>WENV180017133
FSWM01000802
[FSWM] metagenome; soil
6696
6621
-
Ala
CGC
[ENA]
¢þ
>WENV180017132
FSWM01000787
[FSWM] metagenome; soil
7283
7208
-
Phe
GAA
[ENA]
¢þ
>WENV180017159
FSWM01001152
[FSWM] metagenome; soil
7712
7785
+
Cys
GCA
[ENA]
¢þ
>WENV180017123
FSWM01000670
[FSWM] metagenome; soil
8493
8582
+
Ser
GGA
[ENA]
¢þ
>WENV180017094
FSWM01000294
[FSWM] metagenome; soil
9377
9451
+
Lys
TTT
[ENA]
¢þ
>WENV180017153
FSWM01001048
[FSWM] metagenome; soil
9757
9682
-
Ala
GGC
[ENA]
¢þ
>WENV180017095
FSWM01000295
[FSWM] metagenome; soil
10151
10076
-
Ala
CGC
[ENA]
¢þ
>WENV180017161
FSWM01001153
[FSWM] metagenome; soil
10964
10888
-
Arg
TCT
[ENA]
¢þ
>WENV180017160
FSWM01001153
[FSWM] metagenome; soil
11392
11316
-
Pro
TGG
[ENA]
¢þ
>WENV180017143
FSWM01000908
[FSWM] metagenome; soil
12696
12610
-
Leu
CAG
[ENA]
¢þ
>WENV180017138
FSWM01000827
[FSWM] metagenome; soil
14038
14127
+
Ser
TGA
[ENA]
¢þ
>WENV180017131
FSWM01000787
[FSWM] metagenome; soil
14203
14277
+
Thr
GGT
[ENA]
¢þ
>WENV180017125
FSWM01000693
[FSWM] metagenome; soil
14816
14742
-
Val
CAC
[ENA]
¢þ
>WENV180017110
FSWM01000376
[FSWM] metagenome; soil
14820
14731
-
Ser
CGA
[ENA]
¢þ
>WENV180017119
FSWM01000600
[FSWM] metagenome; soil
15509
15434
-
Lys
CTT
[ENA]
¢þ
>WENV180017102
FSWM01000333
[FSWM] metagenome; soil
17306
17233
-
Gln
TTG
[ENA]
¢þ
>WENV180017101
FSWM01000333
[FSWM] metagenome; soil
17575
17651
+
Pro
CGG
[ENA]
¢þ
>WENV180017142
FSWM01000903
[FSWM] metagenome; soil
17985
18061
+
Arg
ACG
[ENA]
¢þ
>WENV180017127
FSWM01000753
[FSWM] metagenome; soil
18606
18681
+
Ile2
CAT
[ENA]
¢þ
>WENV180017085
FSWM01000200
[FSWM] metagenome; soil
19737
19813
+
Met
CAT
[ENA]
¢þ
>WENV180017104
FSWM01000343
[FSWM] metagenome; soil
19974
20058
+
Leu
CAA
[ENA]
¢þ
>WENV180017163
FSWM01001189
[FSWM] metagenome; soil
20464
20548
+
Leu
CAA
[ENA]
¢þ
>WENV180017091
FSWM01000266
[FSWM] metagenome; soil
21520
21446
-
Thr
GGT
[ENA]
¢þ
>WENV180017100
FSWM01000325
[FSWM] metagenome; soil
21530
21456
-
Gly
CCC
[ENA]
¢þ
>WENV180017099
FSWM01000325
[FSWM] metagenome; soil
21740
21816
+
Arg
CCT
[ENA]
¢þ
>WENV180017112
FSWM01000400
[FSWM] metagenome; soil
23971
24055
+
Leu
TAA
[ENA]
¢þ
>WENV180017098
FSWM01000322
[FSWM] metagenome; soil
24740
24824
+
Leu
TAA
[ENA]
¢þ
>WENV180017084
FSWM01000186
[FSWM] metagenome; soil
25011
24938
-
Gln
TTG
[ENA]
¢þ
>WENV180017114
FSWM01000542
[FSWM] metagenome; soil
25097
25022
-
Lys
CTT
[ENA]
¢þ
>WENV180017083
FSWM01000186
[FSWM] metagenome; soil
25228
25304
+
Pro
CGG
[ENA]
¢þ
>WENV180017136
FSWM01000803
[FSWM] metagenome; soil
25381
25289
-
Ser
GCT
[ENA]
¢þ
>WENV180017107
FSWM01000345
[FSWM] metagenome; soil
25990
25914
-
Arg
TCT
[ENA]
¢þ
>WENV180017106
FSWM01000345
[FSWM] metagenome; soil
26414
26338
-
Pro
TGG
[ENA]
¢þ
>WENV180017144
FSWM01000925
[FSWM] metagenome; soil
27281
27205
-
His
GTG
[ENA]
¢þ
>WENV180017105
FSWM01000345
[FSWM] metagenome; soil
27422
27348
-
Glu
TTC
[ENA]
¢þ
>WENV180017158
FSWM01001139
[FSWM] metagenome; soil
28684
28758
+
Gly
GCC
[ENA]
¢þ
>WENV180017120
FSWM01000620
[FSWM] metagenome; soil
31384
31310
-
Lys
TTT
[ENA]
¢þ
>WENV180017164
FSWM01001191
[FSWM] metagenome; soil
32701
32627
-
Gly
GCC
[ENA]
¢þ
>WENV180017135
FSWM01000803
[FSWM] metagenome; soil
33532
33448
-
Leu
GAG
[ENA]
¢þ
>WENV180017108
FSWM01000353
[FSWM] metagenome; soil
39947
40022
+
Thr
CGT
[ENA]
¢þ
>WENV180017150
FSWM01001041
[FSWM] metagenome; soil
42146
42221
+
Thr
CGT
[ENA]
¢þ
>WENV180017134
FSWM01000803
[FSWM] metagenome; soil
44691
44615
-
fMet
CAT
[ENA]
¢þ
>WENV180017093
FSWM01000271
[FSWM] metagenome; soil
49394
49470
+
Met
CAT
[ENA]
¢þ
>WENV180017103
FSWM01000334
[FSWM] metagenome; soil
81813
81737
-
Arg
CCG
[ENA]
¢þ
>WENV180017089
FSWM01000251
[FSWM] metagenome; soil
96404
96329
-
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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