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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSWN] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017173
FSWN01000028
[FSWN] metagenome; soil
24
99
+
Phe
GAA
[ENA]
¢þ
>WENV180017178
FSWN01000095
[FSWN] metagenome; soil
74
-1
-
Thr
CGT
[ENA]
¢þ
>WENV180017176
FSWN01000095
[FSWN] metagenome; soil
220
309
+
Ser
TGA
[ENA]
¢þ
>WENV180017172
FSWN01000021
[FSWN] metagenome; soil
569
496
-
Gly
CCC
[ENA]
¢þ
>WENV180017174
FSWN01000058
[FSWN] metagenome; soil
1988
1912
-
Arg
CCT
[ENA]
¢þ
>WENV180017175
FSWN01000079
[FSWN] metagenome; soil
2481
2407
-
Val
CAC
[ENA]
¢þ
>WENV180017179
FSWN01000150
[FSWN] metagenome; soil
4358
4283
-
Thr
TGT
[ENA]
¢þ
>WENV180017177
FSWN01000095
[FSWN] metagenome; soil
7209
7285
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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