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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSWT] metagenome; soil
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017345
FSWT01000758
[FSWT] metagenome; soil
13
89
+
Arg
CCT
[ENA]
¢þ
>WENV180017347
FSWT01000783
[FSWT] metagenome; soil
22
98
+
Arg
CCG
[ENA]
¢þ
>WENV180017339
FSWT01000651
[FSWT] metagenome; soil
97
24
-
Cys
GCA
[ENA]
¢þ
>WENV180017329
FSWT01000435
[FSWT] metagenome; soil
326
251
-
Ala
GGC
[ENA]
¢þ
>WENV180017335
FSWT01000517
[FSWT] metagenome; soil
455
541
+
Leu
TAA
[ENA]
¢þ
>WENV180017332
FSWT01000448
[FSWT] metagenome; soil
677
751
+
Val
CAC
[ENA]
¢þ
>WENV180017331
FSWT01000447
[FSWT] metagenome; soil
934
1010
+
Asp
GTC
[ENA]
¢þ
>WENV180017316
FSWT01000059
[FSWT] metagenome; soil
1063
1152
+
Ser
TGA
[ENA]
¢þ
>WENV180017338
FSWT01000626
[FSWT] metagenome; soil
1202
1126
-
His
GTG
[ENA]
¢þ
>WENV180017320
FSWT01000095
[FSWT] metagenome; soil
1500
1575
+
Asn
GTT
[ENA]
¢þ
>WENV180017344
FSWT01000751
[FSWT] metagenome; soil
2168
2095
-
Ile2
CAT
[ENA]
¢þ
>WENV180017330
FSWT01000444
[FSWT] metagenome; soil
2191
2115
-
Val
TAC
[ENA]
¢þ
>WENV180017314
FSWT01000001
[FSWT] metagenome; soil
2268
2194
-
Gly
GCC
[ENA]
¢þ
>WENV180017327
FSWT01000404
[FSWT] metagenome; soil
2657
2732
+
Phe
GAA
[ENA]
¢þ
>WENV180017328
FSWT01000434
[FSWT] metagenome; soil
2864
2791
-
Cys
GCA
[ENA]
¢þ
>WENV180017322
FSWT01000203
[FSWT] metagenome; soil
3096
3020
-
Pro
GGG
[ENA]
¢þ
>WENV180017342
FSWT01000692
[FSWT] metagenome; soil
3170
3081
-
Ser
CGA
[ENA]
¢þ
>WENV180017315
FSWT01000040
[FSWT] metagenome; soil
3365
3450
+
Tyr
GTA
[ENA]
¢þ
>WENV180017346
FSWT01000773
[FSWT] metagenome; soil
3424
3348
-
Arg
ACG
[ENA]
¢þ
>WENV180017340
FSWT01000658
[FSWT] metagenome; soil
3824
3752
-
Cys
GCA
[ENA]
¢þ
>WENV180017336
FSWT01000532
[FSWT] metagenome; soil
4218
4294
+
Arg
ACG
[ENA]
¢þ
>WENV180017333
FSWT01000452
[FSWT] metagenome; soil
4298
4222
-
fMet
CAT
[ENA]
¢þ
>WENV180017343
FSWT01000729
[FSWT] metagenome; soil
4323
4398
+
Thr
CGT
[ENA]
¢þ
>WENV180017341
FSWT01000684
[FSWT] metagenome; soil
4370
4443
+
Arg
CCT
[ENA]
¢þ
>WENV180017326
FSWT01000320
[FSWT] metagenome; soil
4499
4423
-
Pro
CGG
[ENA]
¢þ
>WENV180017325
FSWT01000320
[FSWT] metagenome; soil
4658
4731
+
Gln
TTG
[ENA]
¢þ
>WENV180017323
FSWT01000237
[FSWT] metagenome; soil
4726
4816
+
Ser
GCT
[ENA]
¢þ
>WENV180017324
FSWT01000294
[FSWT] metagenome; soil
4895
4969
+
Lys
TTT
[ENA]
¢þ
>WENV180017321
FSWT01000142
[FSWT] metagenome; soil
5720
5634
-
Leu
CAG
[ENA]
¢þ
>WENV180017317
FSWT01000064
[FSWT] metagenome; soil
5721
5795
+
Val
GAC
[ENA]
¢þ
>WENV180017318
FSWT01000072
[FSWT] metagenome; soil
6025
6100
+
Trp
CCA
[ENA]
¢þ
>WENV180017337
FSWT01000615
[FSWT] metagenome; soil
6146
6071
-
Thr
CGT
[ENA]
¢þ
>WENV180017334
FSWT01000453
[FSWT] metagenome; soil
7331
7417
+
Leu
CAG
[ENA]
¢þ
>WENV180017319
FSWT01000088
[FSWT] metagenome; soil
12571
12487
-
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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