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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSWW] metagenome; soil
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017406
FSWW01000427
[FSWW] metagenome; soil
15
90
+
Asp
GTC
[ENA]
¢þ
>WENV180017396
FSWW01000208
[FSWW] metagenome; soil
24
99
+
Thr
CGT
[ENA]
¢þ
>WENV180017397
FSWW01000261
[FSWW] metagenome; soil
87
11
-
Pro
CGG
[ENA]
¢þ
>WENV180017400
FSWW01000318
[FSWW] metagenome; soil
194
120
-
Leu
TAA
[ENA]
¢þ
>WENV180017407
FSWW01000439
[FSWW] metagenome; soil
298
225
-
Gln
TTG
[ENA]
¢þ
>WENV180017392
FSWW01000104
[FSWW] metagenome; soil
468
381
-
Ser
TGA
[ENA]
¢þ
>WENV180017408
FSWW01000440
[FSWW] metagenome; soil
785
859
+
Arg
CCG
[ENA]
¢þ
>WENV180017404
FSWW01000397
[FSWW] metagenome; soil
994
1068
+
Leu
TAA
[ENA]
¢þ
>WENV180017405
FSWW01000420
[FSWW] metagenome; soil
1245
1170
-
Gly
GCC
[ENA]
¢þ
>WENV180017410
FSWW01000457
[FSWW] metagenome; soil
1253
1326
+
Ala
TGC
[ENA]
¢þ
>WENV180017395
FSWW01000159
[FSWW] metagenome; soil
1303
1379
+
Ile
GAT
[ENA]
¢þ
>WENV180017398
FSWW01000269
[FSWW] metagenome; soil
1307
1235
-
Arg
CCG
[ENA]
¢þ
>WENV180017391
FSWW01000081
[FSWW] metagenome; soil
1886
1961
+
Gly
GCC
[ENA]
¢þ
>WENV180017409
FSWW01000443
[FSWW] metagenome; soil
2804
2880
+
Pro
CGG
[ENA]
¢þ
>WENV180017394
FSWW01000150
[FSWW] metagenome; soil
2855
2941
+
Ser
CGA
[ENA]
¢þ
>WENV180017390
FSWW01000025
[FSWW] metagenome; soil
2881
2974
+
Ser
GCT
[ENA]
¢þ
>WENV180017393
FSWW01000149
[FSWW] metagenome; soil
3241
3315
+
fMet
CAT
[ENA]
¢þ
>WENV180017401
FSWW01000328
[FSWW] metagenome; soil
3295
3368
+
Trp
CCA
[ENA]
¢þ
>WENV180017399
FSWW01000277
[FSWW] metagenome; soil
3625
3700
+
Asp
GTC
[ENA]
¢þ
>WENV180017411
FSWW01000578
[FSWW] metagenome; soil
5182
5257
+
Asn
GTT
[ENA]
¢þ
>WENV180017403
FSWW01000386
[FSWW] metagenome; soil
5199
5123
-
Ile
GAT
[ENA]
¢þ
>WENV180017402
FSWW01000386
[FSWW] metagenome; soil
7637
7709
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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