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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSWZ] metagenome; soil
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017429
FSWZ01000315
[FSWZ] metagenome; soil
139
55
-
Leu
TAG
[ENA]
¢þ
>WENV180017422
FSWZ01000037
[FSWZ] metagenome; soil
139
214
+
Asn
GTT
[ENA]
¢þ
>WENV180017426
FSWZ01000171
[FSWZ] metagenome; soil
208
292
+
Leu
TAA
[ENA]
¢þ
>WENV180017424
FSWZ01000076
[FSWZ] metagenome; soil
1847
1771
-
Arg
TCT
[ENA]
¢þ
>WENV180017428
FSWZ01000304
[FSWZ] metagenome; soil
2442
2366
-
Asp
GTC
[ENA]
¢þ
>WENV180017423
FSWZ01000066
[FSWZ] metagenome; soil
2629
2719
+
Ser
GCT
[ENA]
¢þ
>WENV180017427
FSWZ01000206
[FSWZ] metagenome; soil
3320
3395
+
Thr
CGT
[ENA]
¢þ
>WENV180017425
FSWZ01000128
[FSWZ] metagenome; soil
4645
4569
-
Arg
ACG
[ENA]
¢þ
>WENV180017431
FSWZ01000357
[FSWZ] metagenome; soil
5507
5432
-
Ile2
CAT
[ENA]
¢þ
>WENV180017430
FSWZ01000357
[FSWZ] metagenome; soil
22599
22675
+
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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