This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FSXA] metagenome; soil
HIT:
67 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017478
FSXA01001186
[FSXA] metagenome; soil
3
78
+
Lys
CTT
[ENA]
¢þ
>WENV180017454
FSXA01000644
[FSXA] metagenome; soil
3
95
+
Ser
GCT
[ENA]
¢þ
>WENV180017475
FSXA01001111
[FSXA] metagenome; soil
6
80
+
Cys
GCA
[ENA]
¢þ
>WENV180017471
FSXA01001043
[FSXA] metagenome; soil
6
97
+
Ser
CGA
[ENA]
¢þ
>WENV180017473
FSXA01001072
[FSXA] metagenome; soil
11
85
+
Val
CAC
[ENA]
¢þ
>WENV180017443
FSXA01000424
[FSXA] metagenome; soil
17
93
+
Pro
GGG
[ENA]
¢þ
>WENV180017449
FSXA01000494
[FSXA] metagenome; soil
21
97
+
Pro
TGG
[ENA]
¢þ
>WENV180017462
FSXA01000917
[FSXA] metagenome; soil
73
-1
-
Arg
TCT
[ENA]
¢þ
>WENV180017442
FSXA01000400
[FSXA] metagenome; soil
114
189
+
Ala
GGC
[ENA]
¢þ
>WENV180017476
FSXA01001111
[FSXA] metagenome; soil
163
237
+
Gly
GCC
[ENA]
¢þ
>WENV180017460
FSXA01000752
[FSXA] metagenome; soil
249
173
-
Arg
CCG
[ENA]
¢þ
>WENV180017494
FSXA01001413
[FSXA] metagenome; soil
252
168
-
Leu
GAG
[ENA]
¢þ
>WENV180017439
FSXA01000355
[FSXA] metagenome; soil
507
413
-
SeC
TCA
[ENA]
¢þ
>WENV180017477
FSXA01001111
[FSXA] metagenome; soil
562
651
+
Ser
TGA
[ENA]
¢þ
>WENV180017456
FSXA01000679
[FSXA] metagenome; soil
696
610
-
Leu
CAA
[ENA]
¢þ
>WENV180017490
FSXA01001326
[FSXA] metagenome; soil
851
775
-
fMet
CAT
[ENA]
¢þ
>WENV180017466
FSXA01000975
[FSXA] metagenome; soil
923
999
+
Arg
TCT
[ENA]
¢þ
>WENV180017488
FSXA01001296
[FSXA] metagenome; soil
940
1028
+
Leu
TAA
[ENA]
¢þ
>WENV180017492
FSXA01001364
[FSXA] metagenome; soil
1084
1160
+
Arg
ACG
[ENA]
¢þ
>WENV180017485
FSXA01001271
[FSXA] metagenome; soil
1371
1445
+
Asn
GTT
[ENA]
¢þ
>WENV180017486
FSXA01001279
[FSXA] metagenome; soil
1544
1620
+
fMet
CAT
[ENA]
¢þ
>WENV180017465
FSXA01000927
[FSXA] metagenome; soil
1602
1689
+
Ser
GGA
[ENA]
¢þ
>WENV180017487
FSXA01001291
[FSXA] metagenome; soil
1913
1824
-
Ser
TGA
[ENA]
¢þ
>WENV180017445
FSXA01000443
[FSXA] metagenome; soil
1950
2026
+
Val
TAC
[ENA]
¢þ
>WENV180017437
FSXA01000254
[FSXA] metagenome; soil
2217
2292
+
Ile2
CAT
[ENA]
¢þ
>WENV180017498
FSXA01001487
[FSXA] metagenome; soil
2279
2354
+
Ala
CGC
[ENA]
¢þ
>WENV180017497
FSXA01001477
[FSXA] metagenome; soil
2524
2440
-
Leu
GAG
[ENA]
¢þ
>WENV180017459
FSXA01000740
[FSXA] metagenome; soil
2557
2481
-
Pro
CGG
[ENA]
¢þ
>WENV180017464
FSXA01000923
[FSXA] metagenome; soil
2564
2646
+
Leu
GAG
[ENA]
¢þ
>WENV180017441
FSXA01000379
[FSXA] metagenome; soil
2586
2502
-
Leu
GAG
[ENA]
¢þ
>WENV180017440
FSXA01000373
[FSXA] metagenome; soil
2617
2544
-
Gln
CTG
[ENA]
¢þ
>WENV180017474
FSXA01001088
[FSXA] metagenome; soil
2632
2708
+
Pro
CGG
[ENA]
¢þ
>WENV180017433
FSXA01000103
[FSXA] metagenome; soil
2637
2562
-
Lys
TTT
[ENA]
¢þ
>WENV180017436
FSXA01000218
[FSXA] metagenome; soil
2841
2750
-
Ser
GCT
[ENA]
¢þ
>WENV180017438
FSXA01000265
[FSXA] metagenome; soil
2883
2958
+
Lys
CTT
[ENA]
¢þ
>WENV180017470
FSXA01001037
[FSXA] metagenome; soil
2952
3027
+
Lys
CTT
[ENA]
¢þ
>WENV180017461
FSXA01000801
[FSXA] metagenome; soil
2956
3030
+
Gly
CCC
[ENA]
¢þ
>WENV180017495
FSXA01001431
[FSXA] metagenome; soil
2971
3062
+
Ser
CGA
[ENA]
¢þ
>WENV180017472
FSXA01001047
[FSXA] metagenome; soil
3103
3028
-
Cys
GCA
[ENA]
¢þ
>WENV180017434
FSXA01000106
[FSXA] metagenome; soil
3287
3213
-
Phe
GAA
[ENA]
¢þ
>WENV180017435
FSXA01000171
[FSXA] metagenome; soil
3481
3556
+
Lys
CTT
[ENA]
¢þ
>WENV180017447
FSXA01000486
[FSXA] metagenome; soil
3541
3468
-
Gln
CTG
[ENA]
¢þ
>WENV180017451
FSXA01000525
[FSXA] metagenome; soil
3738
3813
+
Cys
GCA
[ENA]
¢þ
>WENV180017450
FSXA01000520
[FSXA] metagenome; soil
3788
3863
+
Lys
CTT
[ENA]
¢þ
>WENV180017452
FSXA01000609
[FSXA] metagenome; soil
3822
3747
-
Ala
GGC
[ENA]
¢þ
>WENV180017453
FSXA01000641
[FSXA] metagenome; soil
4528
4452
-
Arg
ACG
[ENA]
¢þ
>WENV180017468
FSXA01000988
[FSXA] metagenome; soil
4544
4468
-
Pro
GGG
[ENA]
¢þ
>WENV180017481
FSXA01001236
[FSXA] metagenome; soil
5235
5317
+
Leu
GAG
[ENA]
¢þ
>WENV180017467
FSXA01000984
[FSXA] metagenome; soil
5460
5386
-
Val
CAC
[ENA]
¢þ
>WENV180017458
FSXA01000707
[FSXA] metagenome; soil
5778
5703
-
Thr
CGT
[ENA]
¢þ
>WENV180017444
FSXA01000439
[FSXA] metagenome; soil
5956
5880
-
Glu
CTC
[ENA]
¢þ
>WENV180017457
FSXA01000681
[FSXA] metagenome; soil
6211
6137
-
Glu
TTC
[ENA]
¢þ
>WENV180017484
FSXA01001259
[FSXA] metagenome; soil
6656
6580
-
Pro
GGG
[ENA]
¢þ
>WENV180017480
FSXA01001201
[FSXA] metagenome; soil
7246
7172
-
Asn
GTT
[ENA]
¢þ
>WENV180017493
FSXA01001379
[FSXA] metagenome; soil
8130
8054
-
Pro
GGG
[ENA]
¢þ
>WENV180017479
FSXA01001197
[FSXA] metagenome; soil
8267
8191
-
Val
GAC
[ENA]
¢þ
>WENV180017482
FSXA01001257
[FSXA] metagenome; soil
9069
9143
+
Gly
GCC
[ENA]
¢þ
>WENV180017483
FSXA01001257
[FSXA] metagenome; soil
9245
9319
+
Cys
GCA
[ENA]
¢þ
>WENV180017496
FSXA01001445
[FSXA] metagenome; soil
9868
9777
-
Ser
CGA
[ENA]
¢þ
>WENV180017463
FSXA01000918
[FSXA] metagenome; soil
10012
9928
-
Leu
TAG
[ENA]
¢þ
>WENV180017446
FSXA01000454
[FSXA] metagenome; soil
11221
11145
-
Pro
GGG
[ENA]
¢þ
>WENV180017432
FSXA01000056
[FSXA] metagenome; soil
11701
11626
-
Lys
CTT
[ENA]
¢þ
>WENV180017469
FSXA01000995
[FSXA] metagenome; soil
13539
13463
-
Arg
TCT
[ENA]
¢þ
>WENV180017455
FSXA01000659
[FSXA] metagenome; soil
19324
19408
+
Leu
TAG
[ENA]
¢þ
>WENV180017491
FSXA01001341
[FSXA] metagenome; soil
25925
26012
+
Ser
GGA
[ENA]
¢þ
>WENV180017448
FSXA01000491
[FSXA] metagenome; soil
27911
27835
-
Asp
GTC
[ENA]
¢þ
>WENV180017489
FSXA01001307
[FSXA] metagenome; soil
51478
51554
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK