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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSXF] metagenome; soil
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017537
FSXF01000387
[FSXF] metagenome; soil
80
5
-
Lys
CTT
[ENA]
¢þ
>WENV180017544
FSXF01000490
[FSXF] metagenome; soil
110
36
-
Arg
CCT
[ENA]
¢þ
>WENV180017543
FSXF01000471
[FSXF] metagenome; soil
231
306
+
Thr
CGT
[ENA]
¢þ
>WENV180017542
FSXF01000451
[FSXF] metagenome; soil
306
232
-
Thr
GGT
[ENA]
¢þ
>WENV180017512
FSXF01000087
[FSXF] metagenome; soil
357
282
-
Lys
TTT
[ENA]
¢þ
>WENV180017541
FSXF01000451
[FSXF] metagenome; soil
452
379
-
Gly
TCC
[ENA]
¢þ
>WENV180017540
FSXF01000451
[FSXF] metagenome; soil
622
537
-
Tyr
GTA
[ENA]
¢þ
>WENV180017525
FSXF01000290
[FSXF] metagenome; soil
632
708
+
Asp
GTC
[ENA]
¢þ
>WENV180017538
FSXF01000404
[FSXF] metagenome; soil
645
556
-
Ser
TGA
[ENA]
¢þ
>WENV180017509
FSXF01000016
[FSXF] metagenome; soil
1256
1331
+
Ser
ACT
[ENA]
¢þ
>WENV180017514
FSXF01000126
[FSXF] metagenome; soil
1320
1404
+
Leu
GAG
[ENA]
¢þ
>WENV180017516
FSXF01000170
[FSXF] metagenome; soil
1927
1853
-
Gln
CTG
[ENA]
¢þ
>WENV180017526
FSXF01000291
[FSXF] metagenome; soil
1932
1856
-
Pro
CGG
[ENA]
¢þ
>WENV180017518
FSXF01000208
[FSXF] metagenome; soil
2088
2163
+
Gly
GCC
[ENA]
¢þ
>WENV180017517
FSXF01000176
[FSXF] metagenome; soil
2144
2068
-
Gln
TTG
[ENA]
¢þ
>WENV180017519
FSXF01000208
[FSXF] metagenome; soil
2243
2318
+
Gly
GCC
[ENA]
¢þ
>WENV180017520
FSXF01000208
[FSXF] metagenome; soil
2418
2491
+
Cys
GCA
[ENA]
¢þ
>WENV180017547
FSXF01000526
[FSXF] metagenome; soil
2537
2453
-
Leu
CAG
[ENA]
¢þ
>WENV180017507
FSXF01000008
[FSXF] metagenome; soil
2681
2755
+
Val
CAC
[ENA]
¢þ
>WENV180017528
FSXF01000328
[FSXF] metagenome; soil
3911
3986
+
Gly
GCC
[ENA]
¢þ
>WENV180017529
FSXF01000328
[FSXF] metagenome; soil
4076
4150
+
Glu
TTC
[ENA]
¢þ
>WENV180017522
FSXF01000237
[FSXF] metagenome; soil
4118
4193
+
Phe
GAA
[ENA]
¢þ
>WENV180017530
FSXF01000328
[FSXF] metagenome; soil
4158
4243
+
Tyr
GTA
[ENA]
¢þ
>WENV180017534
FSXF01000360
[FSXF] metagenome; soil
4202
4288
+
Leu
TAG
[ENA]
¢þ
>WENV180017524
FSXF01000278
[FSXF] metagenome; soil
4221
4297
+
Pro
TGG
[ENA]
¢þ
>WENV180017531
FSXF01000328
[FSXF] metagenome; soil
4249
4323
+
Gly
TCC
[ENA]
¢þ
>WENV180017532
FSXF01000328
[FSXF] metagenome; soil
4331
4406
+
Phe
GAA
[ENA]
¢þ
>WENV180017533
FSXF01000328
[FSXF] metagenome; soil
4726
4801
+
Gln
TTG
[ENA]
¢þ
>WENV180017545
FSXF01000507
[FSXF] metagenome; soil
4800
4875
+
Ala
GGC
[ENA]
¢þ
>WENV180017513
FSXF01000092
[FSXF] metagenome; soil
4893
4977
+
Leu
CAA
[ENA]
¢þ
>WENV180017546
FSXF01000507
[FSXF] metagenome; soil
4932
5007
+
Glu
TTC
[ENA]
¢þ
>WENV180017511
FSXF01000044
[FSXF] metagenome; soil
5642
5732
+
Ser
GGA
[ENA]
¢þ
>WENV180017521
FSXF01000214
[FSXF] metagenome; soil
6047
6123
+
Val
GAC
[ENA]
¢þ
>WENV180017535
FSXF01000381
[FSXF] metagenome; soil
6157
6232
+
Val
TAC
[ENA]
¢þ
>WENV180017536
FSXF01000381
[FSXF] metagenome; soil
6268
6344
+
Asp
GTC
[ENA]
¢þ
>WENV180017510
FSXF01000019
[FSXF] metagenome; soil
6309
6236
-
Gly
CCC
[ENA]
¢þ
>WENV180017508
FSXF01000015
[FSXF] metagenome; soil
6557
6632
+
Ala
CGC
[ENA]
¢þ
>WENV180017515
FSXF01000151
[FSXF] metagenome; soil
7052
7128
+
Arg
ACG
[ENA]
¢þ
>WENV180017548
FSXF01000563
[FSXF] metagenome; soil
7404
7328
-
Arg
TCT
[ENA]
¢þ
>WENV180017523
FSXF01000276
[FSXF] metagenome; soil
8676
8601
-
Trp
CCA
[ENA]
¢þ
>WENV180017549
FSXF01000574
[FSXF] metagenome; soil
12397
12472
+
Thr
TGT
[ENA]
¢þ
>WENV180017527
FSXF01000327
[FSXF] metagenome; soil
19511
19436
-
Asn
GTT
[ENA]
¢þ
>WENV180017539
FSXF01000413
[FSXF] metagenome; soil
24492
24568
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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