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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSXI] metagenome; soil
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017578
FSXI01000362
[FSXI] metagenome; soil
51
125
+
Arg
TCT
[ENA]
¢þ
>WENV180017577
FSXI01000360
[FSXI] metagenome; soil
73
1
-
Asn
GTT
[ENA]
¢þ
>WENV180017563
FSXI01000162
[FSXI] metagenome; soil
76
1
-
Pro
CGG
[ENA]
¢þ
>WENV180017572
FSXI01000280
[FSXI] metagenome; soil
76
2
-
Arg
TCT
[ENA]
¢þ
>WENV180017570
FSXI01000221
[FSXI] metagenome; soil
77
3
-
Arg
CCT
[ENA]
¢þ
>WENV180017576
FSXI01000318
[FSXI] metagenome; soil
91
5
-
Tyr
GTA
[ENA]
¢þ
>WENV180017566
FSXI01000188
[FSXI] metagenome; soil
752
681
-
Thr
TGT
[ENA]
¢þ
>WENV180017567
FSXI01000201
[FSXI] metagenome; soil
1704
1630
-
Asp
GTC
[ENA]
¢þ
>WENV180017571
FSXI01000257
[FSXI] metagenome; soil
2957
3028
+
Gly
TCC
[ENA]
¢þ
>WENV180017565
FSXI01000186
[FSXI] metagenome; soil
3086
3162
+
Arg
CCG
[ENA]
¢þ
>WENV180017555
FSXI01000026
[FSXI] metagenome; soil
3577
3505
-
Lys
CTT
[ENA]
¢þ
>WENV180017559
FSXI01000102
[FSXI] metagenome; soil
3935
4007
+
Gly
GCC
[ENA]
¢þ
>WENV180017558
FSXI01000095
[FSXI] metagenome; soil
4116
4045
-
Cys
GCA
[ENA]
¢þ
>WENV180017574
FSXI01000295
[FSXI] metagenome; soil
4271
4345
+
Val
GAC
[ENA]
¢þ
>WENV180017579
FSXI01000372
[FSXI] metagenome; soil
4494
4420
-
His
GTG
[ENA]
¢þ
>WENV180017560
FSXI01000115
[FSXI] metagenome; soil
4729
4802
+
Ala
CGC
[ENA]
¢þ
>WENV180017562
FSXI01000162
[FSXI] metagenome; soil
4747
4675
-
Met
CAT
[ENA]
¢þ
>WENV180017573
FSXI01000293
[FSXI] metagenome; soil
6808
6735
-
Trp
CCA
[ENA]
¢þ
>WENV180017557
FSXI01000058
[FSXI] metagenome; soil
10198
10124
-
Gln
CTG
[ENA]
¢þ
>WENV180017556
FSXI01000050
[FSXI] metagenome; soil
10706
10624
-
Leu
CAA
[ENA]
¢þ
>WENV180017568
FSXI01000203
[FSXI] metagenome; soil
14054
14126
+
Lys
TTT
[ENA]
¢þ
>WENV180017575
FSXI01000302
[FSXI] metagenome; soil
17838
17909
+
Val
TAC
[ENA]
¢þ
>WENV180017569
FSXI01000208
[FSXI] metagenome; soil
29687
29598
-
Ser
CGA
[ENA]
¢þ
>WENV180017561
FSXI01000123
[FSXI] metagenome; soil
31754
31674
-
Leu
CAG
[ENA]
¢þ
>WENV180017564
FSXI01000164
[FSXI] metagenome; soil
41497
41568
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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