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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSXK] metagenome; soil
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017622
FSXK01001573
[FSXK] metagenome; soil
1
77
+
Pro
CGG
[ENA]
¢þ
>WENV180017605
FSXK01000688
[FSXK] metagenome; soil
3
93
+
Ser
CGA
[ENA]
¢þ
>WENV180017588
FSXK01000235
[FSXK] metagenome; soil
7
82
+
Gly
GCC
[ENA]
¢þ
>WENV180017597
FSXK01000517
[FSXK] metagenome; soil
11
87
+
fMet
CAT
[ENA]
¢þ
>WENV180017607
FSXK01000760
[FSXK] metagenome; soil
20
93
+
Cys
GCA
[ENA]
¢þ
>WENV180017587
FSXK01000134
[FSXK] metagenome; soil
22
98
+
Asp
GTC
[ENA]
¢þ
>WENV180017625
FSXK01001810
[FSXK] metagenome; soil
74
1
-
Ala
GGC
[ENA]
¢þ
>WENV180017586
FSXK01000118
[FSXK] metagenome; soil
78
2
-
fMet
CAT
[ENA]
¢þ
>WENV180017624
FSXK01001801
[FSXK] metagenome; soil
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV180017594
FSXK01000446
[FSXK] metagenome; soil
78
5
-
Gly
CCC
[ENA]
¢þ
>WENV180017609
FSXK01000961
[FSXK] metagenome; soil
86
160
+
Arg
CCT
[ENA]
¢þ
>WENV180017612
FSXK01001018
[FSXK] metagenome; soil
89
-1
-
Ser
CGA
[ENA]
¢þ
>WENV180017611
FSXK01001017
[FSXK] metagenome; soil
99
26
-
Gly
CCC
[ENA]
¢þ
>WENV180017589
FSXK01000235
[FSXK] metagenome; soil
197
270
+
Cys
GCA
[ENA]
¢þ
>WENV180017591
FSXK01000278
[FSXK] metagenome; soil
290
206
-
Leu
GAG
[ENA]
¢þ
>WENV180017621
FSXK01001532
[FSXK] metagenome; soil
614
690
+
Pro
CGG
[ENA]
¢þ
>WENV180017616
FSXK01001217
[FSXK] metagenome; soil
638
723
+
Leu
CAA
[ENA]
¢þ
>WENV180017585
FSXK01000111
[FSXK] metagenome; soil
702
627
-
Phe
GAA
[ENA]
¢þ
>WENV180017602
FSXK01000619
[FSXK] metagenome; soil
986
892
-
SeC
TCA
[ENA]
¢þ
>WENV180017613
FSXK01001075
[FSXK] metagenome; soil
1125
1030
-
SeC
TCA
[ENA]
¢þ
>WENV180017610
FSXK01000967
[FSXK] metagenome; soil
1236
1310
+
Val
GAC
[ENA]
¢þ
>WENV180017637
FSXK01002033
[FSXK] metagenome; soil
1650
1725
+
Arg
CCG
[ENA]
¢þ
>WENV180017634
FSXK01001909
[FSXK] metagenome; soil
1909
1833
-
Arg
TCT
[ENA]
¢þ
>WENV180017618
FSXK01001304
[FSXK] metagenome; soil
1956
1881
-
Ala
CGC
[ENA]
¢þ
>WENV180017593
FSXK01000389
[FSXK] metagenome; soil
2096
2021
-
His
GTG
[ENA]
¢þ
>WENV180017619
FSXK01001340
[FSXK] metagenome; soil
2717
2809
+
Ser
GCT
[ENA]
¢þ
>WENV180017606
FSXK01000730
[FSXK] metagenome; soil
2835
2760
-
Trp
CCA
[ENA]
¢þ
>WENV180017603
FSXK01000662
[FSXK] metagenome; soil
2905
2821
-
Leu
CAA
[ENA]
¢þ
>WENV180017598
FSXK01000562
[FSXK] metagenome; soil
3003
3077
+
Arg
CCT
[ENA]
¢þ
>WENV180017583
FSXK01000068
[FSXK] metagenome; soil
3152
3077
-
Asn
GTT
[ENA]
¢þ
>WENV180017584
FSXK01000099
[FSXK] metagenome; soil
3397
3322
-
Asn
GTT
[ENA]
¢þ
>WENV180017614
FSXK01001200
[FSXK] metagenome; soil
3651
3745
+
SeC
TCA
[ENA]
¢þ
>WENV180017592
FSXK01000341
[FSXK] metagenome; soil
3682
3606
-
Pro
GGG
[ENA]
¢þ
>WENV180017608
FSXK01000940
[FSXK] metagenome; soil
3945
3869
-
Pro
GGG
[ENA]
¢þ
>WENV180017635
FSXK01001922
[FSXK] metagenome; soil
3975
4050
+
Pro
TGG
[ENA]
¢þ
>WENV180017633
FSXK01001892
[FSXK] metagenome; soil
4336
4260
-
Asp
GTC
[ENA]
¢þ
>WENV180017632
FSXK01001892
[FSXK] metagenome; soil
4418
4344
-
Val
TAC
[ENA]
¢þ
>WENV180017617
FSXK01001304
[FSXK] metagenome; soil
5330
5246
-
Leu
CAG
[ENA]
¢þ
>WENV180017604
FSXK01000668
[FSXK] metagenome; soil
6324
6399
+
Thr
TGT
[ENA]
¢þ
>WENV180017615
FSXK01001202
[FSXK] metagenome; soil
7678
7754
+
Arg
CCG
[ENA]
¢þ
>WENV180017620
FSXK01001387
[FSXK] metagenome; soil
8044
7968
-
Arg
ACG
[ENA]
¢þ
>WENV180017590
FSXK01000236
[FSXK] metagenome; soil
8150
8223
+
Gly
CCC
[ENA]
¢þ
>WENV180017623
FSXK01001602
[FSXK] metagenome; soil
10227
10303
+
Gln
TTG
[ENA]
¢þ
>WENV180017596
FSXK01000495
[FSXK] metagenome; soil
10778
10702
-
Pro
GGG
[ENA]
¢þ
>WENV180017631
FSXK01001892
[FSXK] metagenome; soil
11298
11213
-
Leu
TAG
[ENA]
¢þ
>WENV180017630
FSXK01001892
[FSXK] metagenome; soil
11595
11520
-
Lys
CTT
[ENA]
¢þ
>WENV180017629
FSXK01001892
[FSXK] metagenome; soil
11688
11612
-
His
GTG
[ENA]
¢þ
>WENV180017628
FSXK01001892
[FSXK] metagenome; soil
11782
11706
-
Arg
TCT
[ENA]
¢þ
>WENV180017627
FSXK01001892
[FSXK] metagenome; soil
11881
11805
-
Pro
TGG
[ENA]
¢þ
>WENV180017626
FSXK01001892
[FSXK] metagenome; soil
12134
12058
-
Arg
ACG
[ENA]
¢þ
>WENV180017600
FSXK01000571
[FSXK] metagenome; soil
13760
13684
-
Pro
TGG
[ENA]
¢þ
>WENV180017601
FSXK01000594
[FSXK] metagenome; soil
17059
16967
-
Ser
GGA
[ENA]
¢þ
>WENV180017599
FSXK01000571
[FSXK] metagenome; soil
27071
27145
+
Arg
TCT
[ENA]
¢þ
>WENV180017595
FSXK01000490
[FSXK] metagenome; soil
27329
27404
+
Glu
CTC
[ENA]
¢þ
>WENV180017636
FSXK01001994
[FSXK] metagenome; soil
30683
30608
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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