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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSXL] metagenome; soil
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017641
FSXL01000119
[FSXL] metagenome; soil
24
99
+
Thr
CGT
[ENA]
¢þ
>WENV180017647
FSXL01000247
[FSXL] metagenome; soil
28
98
+
Cys
GCA
[ENA]
¢þ
>WENV180017651
FSXL01000272
[FSXL] metagenome; soil
104
29
-
Ala
TGC
[ENA]
¢þ
>WENV180017682
FSXL01000732
[FSXL] metagenome; soil
279
352
+
Ala
TGC
[ENA]
¢þ
>WENV180017650
FSXL01000272
[FSXL] metagenome; soil
296
222
-
Ile
GAT
[ENA]
¢þ
>WENV180017638
FSXL01000071
[FSXL] metagenome; soil
458
369
-
Ser
TGA
[ENA]
¢þ
>WENV180017681
FSXL01000717
[FSXL] metagenome; soil
616
546
-
Cys
GCA
[ENA]
¢þ
>WENV180017642
FSXL01000128
[FSXL] metagenome; soil
693
765
+
Phe
GAA
[ENA]
¢þ
>WENV180017639
FSXL01000084
[FSXL] metagenome; soil
758
831
+
Lys
CTT
[ENA]
¢þ
>WENV180017645
FSXL01000244
[FSXL] metagenome; soil
827
899
+
Gly
TCC
[ENA]
¢þ
>WENV180017665
FSXL01000488
[FSXL] metagenome; soil
863
936
+
Pro
GGG
[ENA]
¢þ
>WENV180017657
FSXL01000371
[FSXL] metagenome; soil
889
814
-
Arg
TCT
[ENA]
¢þ
>WENV180017654
FSXL01000340
[FSXL] metagenome; soil
1004
1088
+
Leu
GAG
[ENA]
¢þ
>WENV180017671
FSXL01000589
[FSXL] metagenome; soil
1211
1123
-
Ser
TGA
[ENA]
¢þ
>WENV180017648
FSXL01000253
[FSXL] metagenome; soil
1480
1395
-
Ser
TGA
[ENA]
¢þ
>WENV180017670
FSXL01000589
[FSXL] metagenome; soil
1939
1849
-
Ser
GCT
[ENA]
¢þ
>WENV180017663
FSXL01000437
[FSXL] metagenome; soil
2150
2077
-
Thr
CGT
[ENA]
¢þ
>WENV180017646
FSXL01000246
[FSXL] metagenome; soil
2488
2560
+
Glu
TTC
[ENA]
¢þ
>WENV180017667
FSXL01000532
[FSXL] metagenome; soil
2542
2470
-
Gln
TTG
[ENA]
¢þ
>WENV180017675
FSXL01000621
[FSXL] metagenome; soil
2632
2544
-
Ser
GGA
[ENA]
¢þ
>WENV180017683
FSXL01000735
[FSXL] metagenome; soil
2740
2813
+
Asn
GTT
[ENA]
¢þ
>WENV180017664
FSXL01000473
[FSXL] metagenome; soil
2955
2883
-
Ala
CGC
[ENA]
¢þ
>WENV180017659
FSXL01000383
[FSXL] metagenome; soil
3129
3053
-
Pro
CGG
[ENA]
¢þ
>WENV180017658
FSXL01000378
[FSXL] metagenome; soil
3273
3355
+
Leu
TAG
[ENA]
¢þ
>WENV180017678
FSXL01000645
[FSXL] metagenome; soil
3752
3679
-
Gln
CTG
[ENA]
¢þ
>WENV180017655
FSXL01000369
[FSXL] metagenome; soil
3766
3694
-
Arg
CCT
[ENA]
¢þ
>WENV180017669
FSXL01000568
[FSXL] metagenome; soil
3808
3736
-
Ala
GGC
[ENA]
¢þ
>WENV180017644
FSXL01000235
[FSXL] metagenome; soil
4467
4394
-
Pro
TGG
[ENA]
¢þ
>WENV180017677
FSXL01000637
[FSXL] metagenome; soil
7029
7104
+
Lys
CTT
[ENA]
¢þ
>WENV180017643
FSXL01000180
[FSXL] metagenome; soil
7495
7569
+
Gln
CTG
[ENA]
¢þ
>WENV180017672
FSXL01000592
[FSXL] metagenome; soil
7857
7784
-
Arg
ACG
[ENA]
¢þ
>WENV180017653
FSXL01000303
[FSXL] metagenome; soil
8177
8251
+
Lys
TTT
[ENA]
¢þ
>WENV180017649
FSXL01000255
[FSXL] metagenome; soil
8976
9049
+
Glu
CTC
[ENA]
¢þ
>WENV180017656
FSXL01000371
[FSXL] metagenome; soil
9187
9262
+
His
GTG
[ENA]
¢þ
>WENV180017652
FSXL01000295
[FSXL] metagenome; soil
9943
9868
-
Val
TAC
[ENA]
¢þ
>WENV180017666
FSXL01000492
[FSXL] metagenome; soil
10557
10482
-
Leu
TAA
[ENA]
¢þ
>WENV180017640
FSXL01000116
[FSXL] metagenome; soil
10742
10660
-
Leu
TAG
[ENA]
¢þ
>WENV180017676
FSXL01000630
[FSXL] metagenome; soil
10950
11024
+
Ala
GGC
[ENA]
¢þ
>WENV180017674
FSXL01000596
[FSXL] metagenome; soil
11681
11607
-
Pro
CGG
[ENA]
¢þ
>WENV180017662
FSXL01000431
[FSXL] metagenome; soil
12317
12243
-
Asp
GTC
[ENA]
¢þ
>WENV180017661
FSXL01000431
[FSXL] metagenome; soil
12422
12349
-
Glu
TTC
[ENA]
¢þ
>WENV180017668
FSXL01000537
[FSXL] metagenome; soil
12565
12492
-
Val
TAC
[ENA]
¢þ
>WENV180017660
FSXL01000387
[FSXL] metagenome; soil
13643
13717
+
Met
CAT
[ENA]
¢þ
>WENV180017679
FSXL01000659
[FSXL] metagenome; soil
15765
15839
+
Lys
TTT
[ENA]
¢þ
>WENV180017680
FSXL01000695
[FSXL] metagenome; soil
17019
17093
+
Thr
CGT
[ENA]
¢þ
>WENV180017673
FSXL01000596
[FSXL] metagenome; soil
26569
26644
+
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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