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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSXN] metagenome; soil
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017722
FSXN01001256
[FSXN] metagenome; soil
19
95
+
Asp
GTC
[ENA]
¢þ
>WENV180017707
FSXN01000959
[FSXN] metagenome; soil
30
106
+
His
GTG
[ENA]
¢þ
>WENV180017701
FSXN01000734
[FSXN] metagenome; soil
78
3
-
Phe
GAA
[ENA]
¢þ
>WENV180017716
FSXN01001102
[FSXN] metagenome; soil
85
11
-
Asn
GTT
[ENA]
¢þ
>WENV180017695
FSXN01000423
[FSXN] metagenome; soil
193
266
+
Gln
TTG
[ENA]
¢þ
>WENV180017687
FSXN01000039
[FSXN] metagenome; soil
545
461
-
Leu
TAG
[ENA]
¢þ
>WENV180017709
FSXN01001021
[FSXN] metagenome; soil
594
668
+
Gly
GCC
[ENA]
¢þ
>WENV180017696
FSXN01000511
[FSXN] metagenome; soil
620
544
-
Pro
GGG
[ENA]
¢þ
>WENV180017700
FSXN01000724
[FSXN] metagenome; soil
667
593
-
Lys
TTT
[ENA]
¢þ
>WENV180017718
FSXN01001183
[FSXN] metagenome; soil
707
632
-
Ala
CGC
[ENA]
¢þ
>WENV180017723
FSXN01001378
[FSXN] metagenome; soil
718
626
-
SeC
TCA
[ENA]
¢þ
>WENV180017710
FSXN01001031
[FSXN] metagenome; soil
1002
1075
+
Cys
GCA
[ENA]
¢þ
>WENV180017698
FSXN01000645
[FSXN] metagenome; soil
1097
1013
-
Leu
GAG
[ENA]
¢þ
>WENV180017713
FSXN01001069
[FSXN] metagenome; soil
1422
1497
+
Ala
CGC
[ENA]
¢þ
>WENV180017699
FSXN01000662
[FSXN] metagenome; soil
1497
1572
+
Lys
TTT
[ENA]
¢þ
>WENV180017705
FSXN01000804
[FSXN] metagenome; soil
1574
1647
+
Cys
GCA
[ENA]
¢þ
>WENV180017703
FSXN01000745
[FSXN] metagenome; soil
1799
1724
-
Ile2
CAT
[ENA]
¢þ
>WENV180017697
FSXN01000549
[FSXN] metagenome; soil
1855
1781
-
Gly
CCC
[ENA]
¢þ
>WENV180017712
FSXN01001039
[FSXN] metagenome; soil
1865
1789
-
Val
TAC
[ENA]
¢þ
>WENV180017689
FSXN01000125
[FSXN] metagenome; soil
1875
1959
+
Leu
CAA
[ENA]
¢þ
>WENV180017692
FSXN01000205
[FSXN] metagenome; soil
1913
1837
-
Pro
CGG
[ENA]
¢þ
>WENV180017688
FSXN01000068
[FSXN] metagenome; soil
2064
1989
-
Phe
GAA
[ENA]
¢þ
>WENV180017691
FSXN01000205
[FSXN] metagenome; soil
2139
2212
+
Gln
TTG
[ENA]
¢þ
>WENV180017720
FSXN01001223
[FSXN] metagenome; soil
2245
2320
+
Ala
GGC
[ENA]
¢þ
>WENV180017704
FSXN01000778
[FSXN] metagenome; soil
2594
2668
+
Glu
TTC
[ENA]
¢þ
>WENV180017706
FSXN01000956
[FSXN] metagenome; soil
2713
2638
-
Ala
CGC
[ENA]
¢þ
>WENV180017690
FSXN01000202
[FSXN] metagenome; soil
3619
3533
-
Leu
CAG
[ENA]
¢þ
>WENV180017714
FSXN01001073
[FSXN] metagenome; soil
3735
3811
+
Pro
TGG
[ENA]
¢þ
>WENV180017702
FSXN01000738
[FSXN] metagenome; soil
3751
3677
-
Val
GAC
[ENA]
¢þ
>WENV180017715
FSXN01001073
[FSXN] metagenome; soil
4203
4279
+
Arg
TCT
[ENA]
¢þ
>WENV180017711
FSXN01001037
[FSXN] metagenome; soil
4495
4419
-
fMet
CAT
[ENA]
¢þ
>WENV180017693
FSXN01000255
[FSXN] metagenome; soil
5562
5488
-
Gly
CCC
[ENA]
¢þ
>WENV180017708
FSXN01001011
[FSXN] metagenome; soil
5965
5890
-
Trp
CCA
[ENA]
¢þ
>WENV180017719
FSXN01001208
[FSXN] metagenome; soil
5995
5906
-
Ser
GGA
[ENA]
¢þ
>WENV180017721
FSXN01001226
[FSXN] metagenome; soil
6205
6279
+
Gly
GCC
[ENA]
¢þ
>WENV180017717
FSXN01001107
[FSXN] metagenome; soil
7935
7846
-
Ser
CGA
[ENA]
¢þ
>WENV180017724
FSXN01001386
[FSXN] metagenome; soil
8366
8442
+
Arg
CCG
[ENA]
¢þ
>WENV180017686
FSXN01000006
[FSXN] metagenome; soil
13115
13039
-
fMet
CAT
[ENA]
¢þ
>WENV180017694
FSXN01000292
[FSXN] metagenome; soil
41357
41281
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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