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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FSXQ] metagenome; soil
HIT:
135 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017756
FSXQ01001212
[FSXQ] metagenome; soil
3
93
+
Ser
GGA
[ENA]
¢þ
>WENV180017841
FSXQ01004241
[FSXQ] metagenome; soil
5
78
+
Cys
GCA
[ENA]
¢þ
>WENV180017833
FSXQ01003991
[FSXQ] metagenome; soil
6
81
+
His
GTG
[ENA]
¢þ
>WENV180017845
FSXQ01004446
[FSXQ] metagenome; soil
7
82
+
Thr
TGT
[ENA]
¢þ
>WENV180017843
FSXQ01004377
[FSXQ] metagenome; soil
9
96
+
Ser
TGA
[ENA]
¢þ
>WENV180017749
FSXQ01001049
[FSXQ] metagenome; soil
10
85
+
Lys
CTT
[ENA]
¢þ
>WENV180017829
FSXQ01003909
[FSXQ] metagenome; soil
11
98
+
Ser
TGA
[ENA]
¢þ
>WENV180017821
FSXQ01003659
[FSXQ] metagenome; soil
11
98
+
Ser
TGA
[ENA]
¢þ
>WENV180017812
FSXQ01003332
[FSXQ] metagenome; soil
12
99
+
Ser
TGA
[ENA]
¢þ
>WENV180017790
FSXQ01002588
[FSXQ] metagenome; soil
19
95
+
Val
GAC
[ENA]
¢þ
>WENV180017793
FSXQ01002705
[FSXQ] metagenome; soil
19
95
+
Pro
GGG
[ENA]
¢þ
>WENV180017825
FSXQ01003748
[FSXQ] metagenome; soil
21
97
+
fMet
CAT
[ENA]
¢þ
>WENV180017773
FSXQ01001990
[FSXQ] metagenome; soil
23
99
+
Pro
GGG
[ENA]
¢þ
>WENV180017854
FSXQ01004816
[FSXQ] metagenome; soil
75
1
-
Met
CAT
[ENA]
¢þ
>WENV180017771
FSXQ01001942
[FSXQ] metagenome; soil
91
-1
-
Ser
CGA
[ENA]
¢þ
>WENV180017816
FSXQ01003575
[FSXQ] metagenome; soil
95
19
-
Gln
TTG
[ENA]
¢þ
>WENV180017777
FSXQ01002169
[FSXQ] metagenome; soil
104
179
+
His
GTG
[ENA]
¢þ
>WENV180017731
FSXQ01000342
[FSXQ] metagenome; soil
115
40
-
Asp
GTC
[ENA]
¢þ
>WENV180017802
FSXQ01002895
[FSXQ] metagenome; soil
127
203
+
Arg
TCT
[ENA]
¢þ
>WENV180017806
FSXQ01003080
[FSXQ] metagenome; soil
300
376
+
Arg
TCT
[ENA]
¢þ
>WENV180017824
FSXQ01003740
[FSXQ] metagenome; soil
367
442
+
Thr
TGT
[ENA]
¢þ
>WENV180017764
FSXQ01001511
[FSXQ] metagenome; soil
392
318
-
Pro
TGG
[ENA]
¢þ
>WENV180017745
FSXQ01000999
[FSXQ] metagenome; soil
405
479
+
Val
CAC
[ENA]
¢þ
>WENV180017846
FSXQ01004488
[FSXQ] metagenome; soil
408
481
+
Gly
CCC
[ENA]
¢þ
>WENV180017799
FSXQ01002797
[FSXQ] metagenome; soil
408
492
+
Leu
CAA
[ENA]
¢þ
>WENV180017858
FSXQ01004901
[FSXQ] metagenome; soil
446
362
-
Leu
GAG
[ENA]
¢þ
>WENV180017810
FSXQ01003285
[FSXQ] metagenome; soil
455
529
+
Val
CAC
[ENA]
¢þ
>WENV180017809
FSXQ01003204
[FSXQ] metagenome; soil
468
395
-
Gly
CCC
[ENA]
¢þ
>WENV180017727
FSXQ01000272
[FSXQ] metagenome; soil
529
604
+
Val
TAC
[ENA]
¢þ
>WENV180017818
FSXQ01003617
[FSXQ] metagenome; soil
623
699
+
Pro
TGG
[ENA]
¢þ
>WENV180017735
FSXQ01000448
[FSXQ] metagenome; soil
793
866
+
Glu
TTC
[ENA]
¢þ
>WENV180017769
FSXQ01001835
[FSXQ] metagenome; soil
857
944
+
Ser
TGA
[ENA]
¢þ
>WENV180017766
FSXQ01001696
[FSXQ] metagenome; soil
976
1051
+
His
GTG
[ENA]
¢þ
>WENV180017789
FSXQ01002427
[FSXQ] metagenome; soil
1074
1150
+
Arg
CCG
[ENA]
¢þ
>WENV180017748
FSXQ01001045
[FSXQ] metagenome; soil
1172
1256
+
Leu
CAA
[ENA]
¢þ
>WENV180017770
FSXQ01001893
[FSXQ] metagenome; soil
1343
1268
-
Ala
CGC
[ENA]
¢þ
>WENV180017853
FSXQ01004796
[FSXQ] metagenome; soil
1513
1589
+
Ile2
CAT
[ENA]
¢þ
>WENV180017840
FSXQ01004234
[FSXQ] metagenome; soil
1529
1605
+
Arg
CCG
[ENA]
¢þ
>WENV180017732
FSXQ01000357
[FSXQ] metagenome; soil
1925
2012
+
Ser
TGA
[ENA]
¢þ
>WENV180017761
FSXQ01001415
[FSXQ] metagenome; soil
2005
2080
+
Asn
GTT
[ENA]
¢þ
>WENV180017800
FSXQ01002819
[FSXQ] metagenome; soil
2053
2129
+
Pro
GGG
[ENA]
¢þ
>WENV180017739
FSXQ01000704
[FSXQ] metagenome; soil
2116
2029
-
Leu
TAA
[ENA]
¢þ
>WENV180017820
FSXQ01003647
[FSXQ] metagenome; soil
2131
2056
-
Pro
TGG
[ENA]
¢þ
>WENV180017819
FSXQ01003647
[FSXQ] metagenome; soil
2215
2138
-
Arg
ACG
[ENA]
¢þ
>WENV180017767
FSXQ01001732
[FSXQ] metagenome; soil
2318
2243
-
Ala
CGC
[ENA]
¢þ
>WENV180017725
FSXQ01000028
[FSXQ] metagenome; soil
2334
2418
+
Leu
GAG
[ENA]
¢þ
>WENV180017781
FSXQ01002274
[FSXQ] metagenome; soil
2352
2429
+
Arg
ACG
[ENA]
¢þ
>WENV180017779
FSXQ01002240
[FSXQ] metagenome; soil
2421
2330
-
Leu
TAA
[ENA]
¢þ
>WENV180017782
FSXQ01002274
[FSXQ] metagenome; soil
2435
2510
+
Asn
GTT
[ENA]
¢þ
>WENV180017792
FSXQ01002697
[FSXQ] metagenome; soil
2488
2396
-
Ser
GCT
[ENA]
¢þ
>WENV180017826
FSXQ01003771
[FSXQ] metagenome; soil
2509
2433
-
Pro
TGG
[ENA]
¢þ
>WENV180017783
FSXQ01002274
[FSXQ] metagenome; soil
2516
2591
+
Pro
CGG
[ENA]
¢þ
>WENV180017762
FSXQ01001445
[FSXQ] metagenome; soil
2542
2452
-
Ser
GGA
[ENA]
¢þ
>WENV180017807
FSXQ01003080
[FSXQ] metagenome; soil
2601
2677
+
Pro
TGG
[ENA]
¢þ
>WENV180017775
FSXQ01002146
[FSXQ] metagenome; soil
2602
2675
+
Gly
CCC
[ENA]
¢þ
>WENV180017784
FSXQ01002274
[FSXQ] metagenome; soil
2606
2690
+
Leu
CAG
[ENA]
¢þ
>WENV180017728
FSXQ01000272
[FSXQ] metagenome; soil
2665
2738
+
His
GTG
[ENA]
¢þ
>WENV180017786
FSXQ01002307
[FSXQ] metagenome; soil
2667
2743
+
Met
CAT
[ENA]
¢þ
>WENV180017785
FSXQ01002274
[FSXQ] metagenome; soil
2697
2773
+
Arg
CCG
[ENA]
¢þ
>WENV180017795
FSXQ01002742
[FSXQ] metagenome; soil
2737
2811
+
Glu
TTC
[ENA]
¢þ
>WENV180017744
FSXQ01000918
[FSXQ] metagenome; soil
2811
2736
-
His
GTG
[ENA]
¢þ
>WENV180017801
FSXQ01002854
[FSXQ] metagenome; soil
2829
2904
+
Val
TAC
[ENA]
¢þ
>WENV180017733
FSXQ01000394
[FSXQ] metagenome; soil
2892
2800
-
Ser
GCT
[ENA]
¢þ
>WENV180017796
FSXQ01002742
[FSXQ] metagenome; soil
2905
2980
+
Asp
GTC
[ENA]
¢þ
>WENV180017760
FSXQ01001375
[FSXQ] metagenome; soil
2918
2842
-
Val
GAC
[ENA]
¢þ
>WENV180017797
FSXQ01002742
[FSXQ] metagenome; soil
2986
3070
+
Cys
GCA
[ENA]
¢þ
>WENV180017814
FSXQ01003464
[FSXQ] metagenome; soil
3082
2995
-
Leu
TAA
[ENA]
¢þ
>WENV180017798
FSXQ01002742
[FSXQ] metagenome; soil
3091
3166
+
His
GTG
[ENA]
¢þ
>WENV180017805
FSXQ01002953
[FSXQ] metagenome; soil
3307
3219
-
Leu
TAA
[ENA]
¢þ
>WENV180017839
FSXQ01004094
[FSXQ] metagenome; soil
3309
3234
-
His
GTG
[ENA]
¢þ
>WENV180017741
FSXQ01000750
[FSXQ] metagenome; soil
3369
3445
+
Arg
ACG
[ENA]
¢þ
>WENV180017838
FSXQ01004094
[FSXQ] metagenome; soil
3414
3329
-
Cys
GCA
[ENA]
¢þ
>WENV180017736
FSXQ01000678
[FSXQ] metagenome; soil
3424
3348
-
Val
GAC
[ENA]
¢þ
>WENV180017835
FSXQ01004063
[FSXQ] metagenome; soil
3456
3380
-
Pro
TGG
[ENA]
¢þ
>WENV180017837
FSXQ01004094
[FSXQ] metagenome; soil
3494
3420
-
Asp
GTC
[ENA]
¢þ
>WENV180017742
FSXQ01000839
[FSXQ] metagenome; soil
3601
3674
+
Gly
CCC
[ENA]
¢þ
>WENV180017794
FSXQ01002714
[FSXQ] metagenome; soil
3633
3719
+
Leu
TAG
[ENA]
¢þ
>WENV180017836
FSXQ01004094
[FSXQ] metagenome; soil
3665
3591
-
Glu
TTC
[ENA]
¢þ
>WENV180017813
FSXQ01003366
[FSXQ] metagenome; soil
3703
3779
+
fMet
CAT
[ENA]
¢þ
>WENV180017844
FSXQ01004440
[FSXQ] metagenome; soil
3789
3880
+
Leu
TAA
[ENA]
¢þ
>WENV180017803
FSXQ01002895
[FSXQ] metagenome; soil
3901
3977
+
Pro
TGG
[ENA]
¢þ
>WENV180017734
FSXQ01000426
[FSXQ] metagenome; soil
3924
3851
-
Cys
GCA
[ENA]
¢þ
>WENV180017776
FSXQ01002166
[FSXQ] metagenome; soil
3925
3998
+
Arg
CCG
[ENA]
¢þ
>WENV180017726
FSXQ01000240
[FSXQ] metagenome; soil
4329
4245
-
Leu
CAA
[ENA]
¢þ
>WENV180017751
FSXQ01001081
[FSXQ] metagenome; soil
4547
4621
+
Lys
TTT
[ENA]
¢þ
>WENV180017774
FSXQ01002142
[FSXQ] metagenome; soil
4614
4520
-
SeC
TCA
[ENA]
¢þ
>WENV180017848
FSXQ01004665
[FSXQ] metagenome; soil
4645
4729
+
Leu
CAA
[ENA]
¢þ
>WENV180017730
FSXQ01000317
[FSXQ] metagenome; soil
4646
4570
-
Asp
GTC
[ENA]
¢þ
>WENV180017831
FSXQ01003934
[FSXQ] metagenome; soil
4646
4573
-
Cys
GCA
[ENA]
¢þ
>WENV180017729
FSXQ01000317
[FSXQ] metagenome; soil
4795
4720
-
Glu
TTC
[ENA]
¢þ
>WENV180017830
FSXQ01003934
[FSXQ] metagenome; soil
4807
4732
-
Gly
GCC
[ENA]
¢þ
>WENV180017780
FSXQ01002243
[FSXQ] metagenome; soil
4911
4835
-
Arg
CCG
[ENA]
¢þ
>WENV180017859
FSXQ01004916
[FSXQ] metagenome; soil
5235
5311
+
Gln
TTG
[ENA]
¢þ
>WENV180017772
FSXQ01001975
[FSXQ] metagenome; soil
5493
5567
+
Arg
ACG
[ENA]
¢þ
>WENV180017811
FSXQ01003311
[FSXQ] metagenome; soil
5584
5657
+
Gly
CCC
[ENA]
¢þ
>WENV180017763
FSXQ01001508
[FSXQ] metagenome; soil
5617
5693
+
fMet
CAT
[ENA]
¢þ
>WENV180017740
FSXQ01000722
[FSXQ] metagenome; soil
5894
5818
-
Pro
TGG
[ENA]
¢þ
>WENV180017849
FSXQ01004699
[FSXQ] metagenome; soil
6000
5910
-
Ser
GGA
[ENA]
¢þ
>WENV180017804
FSXQ01002922
[FSXQ] metagenome; soil
6068
5992
-
Met
CAT
[ENA]
¢þ
>WENV180017852
FSXQ01004776
[FSXQ] metagenome; soil
6257
6170
-
Leu
TAA
[ENA]
¢þ
>WENV180017738
FSXQ01000704
[FSXQ] metagenome; soil
6515
6442
-
Cys
GCA
[ENA]
¢þ
>WENV180017842
FSXQ01004241
[FSXQ] metagenome; soil
6588
6675
+
Leu
TAA
[ENA]
¢þ
>WENV180017737
FSXQ01000704
[FSXQ] metagenome; soil
6678
6603
-
Gly
GCC
[ENA]
¢þ
>WENV180017828
FSXQ01003868
[FSXQ] metagenome; soil
7041
6965
-
Val
GAC
[ENA]
¢þ
>WENV180017827
FSXQ01003801
[FSXQ] metagenome; soil
7234
7161
-
Gly
CCC
[ENA]
¢þ
>WENV180017750
FSXQ01001065
[FSXQ] metagenome; soil
7676
7589
-
Ser
CGA
[ENA]
¢þ
>WENV180017752
FSXQ01001145
[FSXQ] metagenome; soil
7831
7755
-
Arg
TCT
[ENA]
¢þ
>WENV180017857
FSXQ01004819
[FSXQ] metagenome; soil
8036
7961
-
His
GTG
[ENA]
¢þ
>WENV180017856
FSXQ01004819
[FSXQ] metagenome; soil
8141
8056
-
Cys
GCA
[ENA]
¢þ
>WENV180017855
FSXQ01004819
[FSXQ] metagenome; soil
8221
8147
-
Asp
GTC
[ENA]
¢þ
>WENV180017778
FSXQ01002171
[FSXQ] metagenome; soil
8296
8221
-
Arg
ACG
[ENA]
¢þ
>WENV180017834
FSXQ01004036
[FSXQ] metagenome; soil
9754
9828
+
Asn
GTT
[ENA]
¢þ
>WENV180017850
FSXQ01004710
[FSXQ] metagenome; soil
10155
10082
-
Cys
GCA
[ENA]
¢þ
>WENV180017753
FSXQ01001168
[FSXQ] metagenome; soil
10167
10091
-
Ile2
CAT
[ENA]
¢þ
>WENV180017815
FSXQ01003534
[FSXQ] metagenome; soil
10368
10292
-
Arg
ACG
[ENA]
¢þ
>WENV180017768
FSXQ01001824
[FSXQ] metagenome; soil
10426
10352
-
Leu
TAA
[ENA]
¢þ
>WENV180017817
FSXQ01003612
[FSXQ] metagenome; soil
10706
10631
-
Thr
TGT
[ENA]
¢þ
>WENV180017747
FSXQ01001007
[FSXQ] metagenome; soil
11542
11466
-
Asp
GTC
[ENA]
¢þ
>WENV180017851
FSXQ01004776
[FSXQ] metagenome; soil
11595
11520
-
Gly
GCC
[ENA]
¢þ
>WENV180017746
FSXQ01001007
[FSXQ] metagenome; soil
11681
11606
-
Glu
TTC
[ENA]
¢þ
>WENV180017832
FSXQ01003953
[FSXQ] metagenome; soil
14852
14776
-
Arg
CCG
[ENA]
¢þ
>WENV180017765
FSXQ01001647
[FSXQ] metagenome; soil
16599
16672
+
Ala
CGC
[ENA]
¢þ
>WENV180017758
FSXQ01001259
[FSXQ] metagenome; soil
17000
16925
-
Lys
CTT
[ENA]
¢þ
>WENV180017757
FSXQ01001259
[FSXQ] metagenome; soil
17226
17151
-
Lys
TTT
[ENA]
¢þ
>WENV180017808
FSXQ01003131
[FSXQ] metagenome; soil
17801
17725
-
Arg
TCT
[ENA]
¢þ
>WENV180017743
FSXQ01000848
[FSXQ] metagenome; soil
18910
19006
+
SeC
TCA
[ENA]
¢þ
>WENV180017788
FSXQ01002346
[FSXQ] metagenome; soil
21551
21477
-
Ile2
CAT
[ENA]
¢þ
>WENV180017791
FSXQ01002588
[FSXQ] metagenome; soil
21685
21761
+
Met
CAT
[ENA]
¢þ
>WENV180017787
FSXQ01002346
[FSXQ] metagenome; soil
29293
29220
-
Asn
GTT
[ENA]
¢þ
>WENV180017759
FSXQ01001362
[FSXQ] metagenome; soil
43912
43820
-
Ser
GCT
[ENA]
¢þ
>WENV180017847
FSXQ01004616
[FSXQ] metagenome; soil
45985
45911
-
Val
CAC
[ENA]
¢þ
>WENV180017822
FSXQ01003668
[FSXQ] metagenome; soil
57213
57287
+
Gln
CTG
[ENA]
¢þ
>WENV180017823
FSXQ01003668
[FSXQ] metagenome; soil
71227
71300
+
Glu
CTC
[ENA]
¢þ
>WENV180017754
FSXQ01001181
[FSXQ] metagenome; soil
134722
134795
+
Arg
CCG
[ENA]
¢þ
>WENV180017755
FSXQ01001181
[FSXQ] metagenome; soil
219093
219175
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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