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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSXR] metagenome; soil
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017860
FSXR01000020
[FSXR] metagenome; soil
77
4
-
Gln
TTG
[ENA]
¢þ
>WENV180017863
FSXR01000106
[FSXR] metagenome; soil
540
615
+
Cys
GCA
[ENA]
¢þ
>WENV180017862
FSXR01000074
[FSXR] metagenome; soil
2016
2090
+
Gly
CCC
[ENA]
¢þ
>WENV180017864
FSXR01000219
[FSXR] metagenome; soil
4010
4085
+
Thr
TGT
[ENA]
¢þ
>WENV180017865
FSXR01000339
[FSXR] metagenome; soil
4077
4154
+
Glu
TTC
[ENA]
¢þ
>WENV180017861
FSXR01000024
[FSXR] metagenome; soil
8286
8210
-
Pro
GGG
[ENA]
¢þ
>WENV180017866
FSXR01000450
[FSXR] metagenome; soil
11380
11456
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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