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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FSXT] metagenome; soil
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017869
FSXT01000193
[FSXT] metagenome; soil
19
95
+
Pro
CGG
[ENA]
¢þ
>WENV180017876
FSXT01000448
[FSXT] metagenome; soil
21
96
+
Ala
CGC
[ENA]
¢þ
>WENV180017881
FSXT01000728
[FSXT] metagenome; soil
23
98
+
Ala
GGC
[ENA]
¢þ
>WENV180017874
FSXT01000350
[FSXT] metagenome; soil
78
4
-
Glu
TTC
[ENA]
¢þ
>WENV180017879
FSXT01000668
[FSXT] metagenome; soil
181
105
-
Met
CAT
[ENA]
¢þ
>WENV180017885
FSXT01000901
[FSXT] metagenome; soil
915
840
-
Ile2
CAT
[ENA]
¢þ
>WENV180017880
FSXT01000722
[FSXT] metagenome; soil
1374
1450
+
Arg
CCG
[ENA]
¢þ
>WENV180017877
FSXT01000543
[FSXT] metagenome; soil
2052
2136
+
Leu
GAG
[ENA]
¢þ
>WENV180017878
FSXT01000649
[FSXT] metagenome; soil
2295
2368
+
Gln
CTG
[ENA]
¢þ
>WENV180017871
FSXT01000222
[FSXT] metagenome; soil
2519
2593
+
Gly
GCC
[ENA]
¢þ
>WENV180017883
FSXT01000812
[FSXT] metagenome; soil
2645
2569
-
Pro
GGG
[ENA]
¢þ
>WENV180017872
FSXT01000222
[FSXT] metagenome; soil
2668
2742
+
Cys
GCA
[ENA]
¢þ
>WENV180017882
FSXT01000758
[FSXT] metagenome; soil
2759
2845
+
Leu
CAA
[ENA]
¢þ
>WENV180017873
FSXT01000310
[FSXT] metagenome; soil
2883
2808
-
Lys
CTT
[ENA]
¢þ
>WENV180017870
FSXT01000194
[FSXT] metagenome; soil
4060
4136
+
fMet
CAT
[ENA]
¢þ
>WENV180017884
FSXT01000851
[FSXT] metagenome; soil
5394
5470
+
Arg
CCG
[ENA]
¢þ
>WENV180017875
FSXT01000435
[FSXT] metagenome; soil
5602
5676
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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