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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSXU] metagenome; soil
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017900
FSXU01000114
[FSXU] metagenome; soil
9
98
+
Ser
CGA
[ENA]
¢þ
>WENV180017895
FSXU01000071
[FSXU] metagenome; soil
20
95
+
Gly
GCC
[ENA]
¢þ
>WENV180017898
FSXU01000091
[FSXU] metagenome; soil
22
97
+
Lys
TTT
[ENA]
¢þ
>WENV180017890
FSXU01000046
[FSXU] metagenome; soil
26
102
+
fMet
CAT
[ENA]
¢þ
>WENV180017896
FSXU01000071
[FSXU] metagenome; soil
177
250
+
Cys
GCA
[ENA]
¢þ
>WENV180017886
FSXU01000040
[FSXU] metagenome; soil
2083
2172
+
Ser
TGA
[ENA]
¢þ
>WENV180017887
FSXU01000041
[FSXU] metagenome; soil
2804
2879
+
Ala
CGC
[ENA]
¢þ
>WENV180017897
FSXU01000076
[FSXU] metagenome; soil
2925
3014
+
Ser
CGA
[ENA]
¢þ
>WENV180017891
FSXU01000058
[FSXU] metagenome; soil
3672
3598
-
Val
CAC
[ENA]
¢þ
>WENV180017899
FSXU01000098
[FSXU] metagenome; soil
3882
3806
-
Arg
CCG
[ENA]
¢þ
>WENV180017894
FSXU01000067
[FSXU] metagenome; soil
5306
5392
+
Leu
TAA
[ENA]
¢þ
>WENV180017888
FSXU01000045
[FSXU] metagenome; soil
5864
5939
+
Thr
CGT
[ENA]
¢þ
>WENV180017889
FSXU01000045
[FSXU] metagenome; soil
7120
7044
-
Arg
CCT
[ENA]
¢þ
>WENV180017893
FSXU01000064
[FSXU] metagenome; soil
7428
7512
+
Leu
GAG
[ENA]
¢þ
>WENV180017901
FSXU01000116
[FSXU] metagenome; soil
12461
12374
-
Ile2
CAT
[ENA]
¢þ
>WENV180017892
FSXU01000059
[FSXU] metagenome; soil
32317
32241
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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