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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FSXV] metagenome; soil
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017918
FSXV01000087
[FSXV] metagenome; soil
19
95
+
Asp
GTC
[ENA]
¢þ
>WENV180017946
FSXV01000188
[FSXV] metagenome; soil
22
98
+
fMet
CAT
[ENA]
¢þ
>WENV180017905
FSXV01000033
[FSXV] metagenome; soil
78
2
-
Pro
GGG
[ENA]
¢þ
>WENV180017912
FSXV01000070
[FSXV] metagenome; soil
85
11
-
Asn
GTT
[ENA]
¢þ
>WENV180017910
FSXV01000058
[FSXV] metagenome; soil
499
574
+
Thr
TGT
[ENA]
¢þ
>WENV180017944
FSXV01000182
[FSXV] metagenome; soil
570
646
+
Arg
CCT
[ENA]
¢þ
>WENV180017902
FSXV01000005
[FSXV] metagenome; soil
705
781
+
Arg
ACG
[ENA]
¢þ
>WENV180017920
FSXV01000091
[FSXV] metagenome; soil
810
718
-
SeC
TCA
[ENA]
¢þ
>WENV180017924
FSXV01000107
[FSXV] metagenome; soil
1791
1717
-
Thr
GGT
[ENA]
¢þ
>WENV180017903
FSXV01000030
[FSXV] metagenome; soil
2367
2291
-
His
GTG
[ENA]
¢þ
>WENV180017932
FSXV01000152
[FSXV] metagenome; soil
2606
2681
+
Ala
GGC
[ENA]
¢þ
>WENV180017928
FSXV01000140
[FSXV] metagenome; soil
4335
4259
-
fMet
CAT
[ENA]
¢þ
>WENV180017919
FSXV01000089
[FSXV] metagenome; soil
5735
5660
-
Trp
CCA
[ENA]
¢þ
>WENV180017906
FSXV01000036
[FSXV] metagenome; soil
6143
6217
+
Val
CAC
[ENA]
¢þ
>WENV180017925
FSXV01000128
[FSXV] metagenome; soil
7751
7675
-
Val
TAC
[ENA]
¢þ
>WENV180017936
FSXV01000169
[FSXV] metagenome; soil
8791
8866
+
Lys
TTT
[ENA]
¢þ
>WENV180017904
FSXV01000031
[FSXV] metagenome; soil
9008
8924
-
Leu
CAA
[ENA]
¢þ
>WENV180017929
FSXV01000142
[FSXV] metagenome; soil
10764
10689
-
Lys
CTT
[ENA]
¢þ
>WENV180017943
FSXV01000179
[FSXV] metagenome; soil
11007
11091
+
Leu
TAA
[ENA]
¢þ
>WENV180017935
FSXV01000163
[FSXV] metagenome; soil
12669
12744
+
Phe
GAA
[ENA]
¢þ
>WENV180017907
FSXV01000038
[FSXV] metagenome; soil
12862
12935
+
Gly
CCC
[ENA]
¢þ
>WENV180017909
FSXV01000053
[FSXV] metagenome; soil
13351
13278
-
Cys
GCA
[ENA]
¢þ
>WENV180017938
FSXV01000175
[FSXV] metagenome; soil
13750
13834
+
Leu
TAG
[ENA]
¢þ
>WENV180017926
FSXV01000130
[FSXV] metagenome; soil
15355
15269
-
Leu
CAG
[ENA]
¢þ
>WENV180017911
FSXV01000060
[FSXV] metagenome; soil
18577
18661
+
Tyr
GTA
[ENA]
¢þ
>WENV180017915
FSXV01000078
[FSXV] metagenome; soil
18986
18913
-
Gly
TCC
[ENA]
¢þ
>WENV180017914
FSXV01000078
[FSXV] metagenome; soil
19107
19023
-
Tyr
GTA
[ENA]
¢þ
>WENV180017908
FSXV01000045
[FSXV] metagenome; soil
21153
21228
+
Ala
CGC
[ENA]
¢þ
>WENV180017913
FSXV01000071
[FSXV] metagenome; soil
22186
22097
-
Ser
CGA
[ENA]
¢þ
>WENV180017945
FSXV01000182
[FSXV] metagenome; soil
24862
24786
-
Met
CAT
[ENA]
¢þ
>WENV180017933
FSXV01000161
[FSXV] metagenome; soil
25273
25348
+
Thr
CGT
[ENA]
¢þ
>WENV180017934
FSXV01000161
[FSXV] metagenome; soil
27638
27564
-
Val
GAC
[ENA]
¢þ
>WENV180017917
FSXV01000085
[FSXV] metagenome; soil
29401
29328
-
Gln
TTG
[ENA]
¢þ
>WENV180017916
FSXV01000085
[FSXV] metagenome; soil
29624
29700
+
Pro
CGG
[ENA]
¢þ
>WENV180017927
FSXV01000136
[FSXV] metagenome; soil
32047
31964
-
Leu
GAG
[ENA]
¢þ
>WENV180017922
FSXV01000107
[FSXV] metagenome; soil
33297
33371
+
Gly
GCC
[ENA]
¢þ
>WENV180017923
FSXV01000107
[FSXV] metagenome; soil
33481
33555
+
Gly
GCC
[ENA]
¢þ
>WENV180017921
FSXV01000099
[FSXV] metagenome; soil
40952
40878
-
Asn
GTT
[ENA]
¢þ
>WENV180017937
FSXV01000170
[FSXV] metagenome; soil
41959
42033
+
Val
GAC
[ENA]
¢þ
>WENV180017942
FSXV01000178
[FSXV] metagenome; soil
44867
44791
-
Arg
TCT
[ENA]
¢þ
>WENV180017941
FSXV01000178
[FSXV] metagenome; soil
45424
45348
-
Pro
TGG
[ENA]
¢þ
>WENV180017930
FSXV01000149
[FSXV] metagenome; soil
46390
46479
+
Ser
TGA
[ENA]
¢þ
>WENV180017940
FSXV01000178
[FSXV] metagenome; soil
47489
47415
-
Glu
TTC
[ENA]
¢þ
>WENV180017939
FSXV01000178
[FSXV] metagenome; soil
47759
47685
-
Glu
TTC
[ENA]
¢þ
>WENV180017931
FSXV01000149
[FSXV] metagenome; soil
68898
68987
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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