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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FSXZ] metagenome; soil
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017994
FSXZ01001573
[FSXZ] metagenome; soil
3
76
+
Arg
CCG
[ENA]
¢þ
>WENV180018033
FSXZ01002436
[FSXZ] metagenome; soil
5
88
+
Leu
CAG
[ENA]
¢þ
>WENV180018040
FSXZ01002712
[FSXZ] metagenome; soil
26
99
+
Val
CAC
[ENA]
¢þ
>WENV180017959
FSXZ01000092
[FSXZ] metagenome; soil
26
99
+
Gly
TCC
[ENA]
¢þ
>WENV180017980
FSXZ01001006
[FSXZ] metagenome; soil
74
1
-
His
GTG
[ENA]
¢þ
>WENV180017971
FSXZ01000339
[FSXZ] metagenome; soil
90
171
+
Tyr
GTA
[ENA]
¢þ
>WENV180018020
FSXZ01002134
[FSXZ] metagenome; soil
102
174
+
Gly
GCC
[ENA]
¢þ
>WENV180018042
FSXZ01002868
[FSXZ] metagenome; soil
138
56
-
Tyr
GTA
[ENA]
¢þ
>WENV180018036
FSXZ01002581
[FSXZ] metagenome; soil
214
285
+
Gln
TTG
[ENA]
¢þ
>WENV180018021
FSXZ01002134
[FSXZ] metagenome; soil
215
286
+
Cys
GCA
[ENA]
¢þ
>WENV180018029
FSXZ01002337
[FSXZ] metagenome; soil
255
328
+
Lys
CTT
[ENA]
¢þ
>WENV180018018
FSXZ01002077
[FSXZ] metagenome; soil
275
357
+
Leu
TAG
[ENA]
¢þ
>WENV180018011
FSXZ01001718
[FSXZ] metagenome; soil
312
236
-
fMet
CAT
[ENA]
¢þ
>WENV180017989
FSXZ01001422
[FSXZ] metagenome; soil
315
241
-
Arg
CCT
[ENA]
¢þ
>WENV180018034
FSXZ01002440
[FSXZ] metagenome; soil
419
495
+
Thr
TGT
[ENA]
¢þ
>WENV180018048
FSXZ01003021
[FSXZ] metagenome; soil
445
371
-
fMet
CAT
[ENA]
¢þ
>WENV180017975
FSXZ01000576
[FSXZ] metagenome; soil
568
663
+
SeC
TCA
[ENA]
¢þ
>WENV180017986
FSXZ01001188
[FSXZ] metagenome; soil
586
679
+
SeC
TCA
[ENA]
¢þ
>WENV180018047
FSXZ01003021
[FSXZ] metagenome; soil
696
622
-
fMet
CAT
[ENA]
¢þ
>WENV180017977
FSXZ01000746
[FSXZ] metagenome; soil
728
645
-
Leu
CAG
[ENA]
¢þ
>WENV180017967
FSXZ01000252
[FSXZ] metagenome; soil
811
886
+
Pro
TGG
[ENA]
¢þ
>WENV180018019
FSXZ01002102
[FSXZ] metagenome; soil
817
744
-
Arg
TCT
[ENA]
¢þ
>WENV180017995
FSXZ01001617
[FSXZ] metagenome; soil
923
996
+
Trp
CCA
[ENA]
¢þ
>WENV180018017
FSXZ01001958
[FSXZ] metagenome; soil
977
1066
+
Ser
TGA
[ENA]
¢þ
>WENV180017981
FSXZ01001008
[FSXZ] metagenome; soil
1153
1077
-
Pro
GGG
[ENA]
¢þ
>WENV180017996
FSXZ01001617
[FSXZ] metagenome; soil
1220
1294
+
Pro
TGG
[ENA]
¢þ
>WENV180018043
FSXZ01002949
[FSXZ] metagenome; soil
1222
1145
-
Leu
CAA
[ENA]
¢þ
>WENV180017958
FSXZ01000071
[FSXZ] metagenome; soil
1226
1152
-
Thr
CGT
[ENA]
¢þ
>WENV180017997
FSXZ01001617
[FSXZ] metagenome; soil
1296
1369
+
Phe
GAA
[ENA]
¢þ
>WENV180017991
FSXZ01001461
[FSXZ] metagenome; soil
1300
1227
-
Trp
CCA
[ENA]
¢þ
>WENV180017998
FSXZ01001617
[FSXZ] metagenome; soil
1426
1499
+
Lys
CTT
[ENA]
¢þ
>WENV180017983
FSXZ01001115
[FSXZ] metagenome; soil
1440
1368
-
Val
TAC
[ENA]
¢þ
>WENV180018006
FSXZ01001656
[FSXZ] metagenome; soil
1554
1482
-
Gln
TTG
[ENA]
¢þ
>WENV180018023
FSXZ01002208
[FSXZ] metagenome; soil
1685
1759
+
Pro
CGG
[ENA]
¢þ
>WENV180018027
FSXZ01002309
[FSXZ] metagenome; soil
1700
1772
+
Gln
CTG
[ENA]
¢þ
>WENV180018031
FSXZ01002342
[FSXZ] metagenome; soil
1830
1745
-
Leu
GAG
[ENA]
¢þ
>WENV180018005
FSXZ01001647
[FSXZ] metagenome; soil
1842
1753
-
Ser
GGA
[ENA]
¢þ
>WENV180017999
FSXZ01001617
[FSXZ] metagenome; soil
1889
1963
+
Leu
TAG
[ENA]
¢þ
>WENV180017968
FSXZ01000256
[FSXZ] metagenome; soil
1959
1883
-
Arg
TCT
[ENA]
¢þ
>WENV180018045
FSXZ01002997
[FSXZ] metagenome; soil
2140
2064
-
Leu
CAA
[ENA]
¢þ
>WENV180018032
FSXZ01002380
[FSXZ] metagenome; soil
2143
2216
+
Leu
TAG
[ENA]
¢þ
>WENV180017970
FSXZ01000299
[FSXZ] metagenome; soil
2195
2280
+
Ser
CGA
[ENA]
¢þ
>WENV180017988
FSXZ01001301
[FSXZ] metagenome; soil
2304
2378
+
Lys
CTT
[ENA]
¢þ
>WENV180018010
FSXZ01001694
[FSXZ] metagenome; soil
2412
2339
-
Cys
GCA
[ENA]
¢þ
>WENV180018009
FSXZ01001694
[FSXZ] metagenome; soil
2522
2450
-
Gly
GCC
[ENA]
¢þ
>WENV180018000
FSXZ01001617
[FSXZ] metagenome; soil
2529
2601
+
Arg
TCT
[ENA]
¢þ
>WENV180017957
FSXZ01000063
[FSXZ] metagenome; soil
2566
2493
-
Glu
CTC
[ENA]
¢þ
>WENV180017978
FSXZ01000963
[FSXZ] metagenome; soil
2584
2657
+
His
GTG
[ENA]
¢þ
>WENV180018001
FSXZ01001617
[FSXZ] metagenome; soil
2693
2768
+
Glu
TTC
[ENA]
¢þ
>WENV180018002
FSXZ01001617
[FSXZ] metagenome; soil
2769
2842
+
fMet
CAT
[ENA]
¢þ
>WENV180018014
FSXZ01001878
[FSXZ] metagenome; soil
2845
2919
+
Thr
CGT
[ENA]
¢þ
>WENV180017956
FSXZ01000047
[FSXZ] metagenome; soil
2860
2772
-
Ser
TGA
[ENA]
¢þ
>WENV180018003
FSXZ01001617
[FSXZ] metagenome; soil
2897
2968
+
Asn
GTT
[ENA]
¢þ
>WENV180017987
FSXZ01001225
[FSXZ] metagenome; soil
2947
2869
-
Ala
CGC
[ENA]
¢þ
>WENV180018044
FSXZ01002958
[FSXZ] metagenome; soil
3048
2976
-
Arg
CCG
[ENA]
¢þ
>WENV180018022
FSXZ01002134
[FSXZ] metagenome; soil
3050
3122
+
Val
GAC
[ENA]
¢þ
>WENV180018037
FSXZ01002605
[FSXZ] metagenome; soil
3229
3143
-
Ser
GGA
[ENA]
¢þ
>WENV180018008
FSXZ01001682
[FSXZ] metagenome; soil
3249
3174
-
Lys
CTT
[ENA]
¢þ
>WENV180018046
FSXZ01003005
[FSXZ] metagenome; soil
3279
3354
+
Ile2
CAT
[ENA]
¢þ
>WENV180018041
FSXZ01002758
[FSXZ] metagenome; soil
3410
3483
+
Thr
TGT
[ENA]
¢þ
>WENV180017985
FSXZ01001157
[FSXZ] metagenome; soil
3433
3359
-
Leu
TAG
[ENA]
¢þ
>WENV180017993
FSXZ01001566
[FSXZ] metagenome; soil
3520
3446
-
Thr
CGT
[ENA]
¢þ
>WENV180017972
FSXZ01000344
[FSXZ] metagenome; soil
3607
3535
-
Gly
CCC
[ENA]
¢þ
>WENV180017974
FSXZ01000504
[FSXZ] metagenome; soil
3780
3705
-
Ile2
CAT
[ENA]
¢þ
>WENV180017973
FSXZ01000504
[FSXZ] metagenome; soil
3959
3886
-
Asn
GTT
[ENA]
¢þ
>WENV180018038
FSXZ01002618
[FSXZ] metagenome; soil
4254
4326
+
Gly
GCC
[ENA]
¢þ
>WENV180018039
FSXZ01002618
[FSXZ] metagenome; soil
4357
4429
+
Val
GAC
[ENA]
¢þ
>WENV180018049
FSXZ01003124
[FSXZ] metagenome; soil
4509
4427
-
Tyr
GTA
[ENA]
¢þ
>WENV180018007
FSXZ01001672
[FSXZ] metagenome; soil
4620
4694
+
Arg
CCT
[ENA]
¢þ
>WENV180018024
FSXZ01002219
[FSXZ] metagenome; soil
4804
4720
-
Leu
TAA
[ENA]
¢þ
>WENV180018012
FSXZ01001731
[FSXZ] metagenome; soil
5154
5227
+
Leu
CAG
[ENA]
¢þ
>WENV180018013
FSXZ01001731
[FSXZ] metagenome; soil
5245
5319
+
Leu
GAG
[ENA]
¢þ
>WENV180017992
FSXZ01001474
[FSXZ] metagenome; soil
5853
5939
+
Leu
CAA
[ENA]
¢þ
>WENV180018025
FSXZ01002286
[FSXZ] metagenome; soil
6080
6008
-
Val
GAC
[ENA]
¢þ
>WENV180017984
FSXZ01001157
[FSXZ] metagenome; soil
6100
6173
+
Thr
GGT
[ENA]
¢þ
>WENV180018026
FSXZ01002293
[FSXZ] metagenome; soil
6216
6287
+
Cys
GCA
[ENA]
¢þ
>WENV180017979
FSXZ01000986
[FSXZ] metagenome; soil
6234
6158
-
Pro
GGG
[ENA]
¢þ
>WENV180018028
FSXZ01002309
[FSXZ] metagenome; soil
6297
6370
+
Glu
CTC
[ENA]
¢þ
>WENV180017990
FSXZ01001461
[FSXZ] metagenome; soil
7340
7264
-
Met
CAT
[ENA]
¢þ
>WENV180017976
FSXZ01000603
[FSXZ] metagenome; soil
8385
8460
+
Thr
GGT
[ENA]
¢þ
>WENV180018004
FSXZ01001638
[FSXZ] metagenome; soil
8688
8764
+
His
GTG
[ENA]
¢þ
>WENV180018015
FSXZ01001938
[FSXZ] metagenome; soil
9068
9139
+
Trp
CCA
[ENA]
¢þ
>WENV180018035
FSXZ01002475
[FSXZ] metagenome; soil
10104
10185
+
Tyr
GTA
[ENA]
¢þ
>WENV180017960
FSXZ01000229
[FSXZ] metagenome; soil
10751
10823
+
Trp
CCA
[ENA]
¢þ
>WENV180017961
FSXZ01000229
[FSXZ] metagenome; soil
11044
11116
+
Lys
CTT
[ENA]
¢þ
>WENV180017962
FSXZ01000229
[FSXZ] metagenome; soil
11127
11201
+
Thr
CGT
[ENA]
¢þ
>WENV180017963
FSXZ01000229
[FSXZ] metagenome; soil
11361
11442
+
Leu
TAG
[ENA]
¢þ
>WENV180017964
FSXZ01000229
[FSXZ] metagenome; soil
11459
11532
+
Lys
TTT
[ENA]
¢þ
>WENV180018030
FSXZ01002342
[FSXZ] metagenome; soil
11518
11595
+
Thr
CGT
[ENA]
¢þ
>WENV180017965
FSXZ01000229
[FSXZ] metagenome; soil
11555
11632
+
Met
CAT
[ENA]
¢þ
>WENV180017966
FSXZ01000229
[FSXZ] metagenome; soil
11714
11787
+
Arg
ACG
[ENA]
¢þ
>WENV180017969
FSXZ01000272
[FSXZ] metagenome; soil
12136
12062
-
Thr
CGT
[ENA]
¢þ
>WENV180018016
FSXZ01001956
[FSXZ] metagenome; soil
18720
18793
+
Gly
CCC
[ENA]
¢þ
>WENV180017982
FSXZ01001051
[FSXZ] metagenome; soil
20570
20642
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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