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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSYA] metagenome; soil
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018057
FSYA01000969
[FSYA] metagenome; soil
155
80
-
Pro
CGG
[ENA]
¢þ
>WENV180018060
FSYA01001354
[FSYA] metagenome; soil
871
797
-
Asn
GTT
[ENA]
¢þ
>WENV180018052
FSYA01000551
[FSYA] metagenome; soil
883
955
+
Gln
TTG
[ENA]
¢þ
>WENV180018051
FSYA01000156
[FSYA] metagenome; soil
1332
1237
-
SeC
TCA
[ENA]
¢þ
>WENV180018058
FSYA01001015
[FSYA] metagenome; soil
2325
2235
-
Ser
GCT
[ENA]
¢þ
>WENV180018053
FSYA01000712
[FSYA] metagenome; soil
2325
2399
+
Ile2
CAT
[ENA]
¢þ
>WENV180018055
FSYA01000764
[FSYA] metagenome; soil
2954
3026
+
Gln
CTG
[ENA]
¢þ
>WENV180018059
FSYA01001283
[FSYA] metagenome; soil
3222
3148
-
Thr
TGT
[ENA]
¢þ
>WENV180018050
FSYA01000036
[FSYA] metagenome; soil
3336
3421
+
Ser
GGA
[ENA]
¢þ
>WENV180018054
FSYA01000729
[FSYA] metagenome; soil
3515
3591
+
fMet
CAT
[ENA]
¢þ
>WENV180018056
FSYA01000764
[FSYA] metagenome; soil
3692
3765
+
Glu
CTC
[ENA]
¢þ
>WENV180018061
FSYA01001575
[FSYA] metagenome; soil
4187
4262
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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