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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSYC] metagenome; soil
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018082
FSYC01000397
[FSYC] metagenome; soil
14
99
+
Leu
CAA
[ENA]
¢þ
>WENV180018081
FSYC01000366
[FSYC] metagenome; soil
25
98
+
Cys
GCA
[ENA]
¢þ
>WENV180018067
FSYC01000117
[FSYC] metagenome; soil
80
4
-
Pro
TGG
[ENA]
¢þ
>WENV180018095
FSYC01000655
[FSYC] metagenome; soil
119
192
+
Gln
CTG
[ENA]
¢þ
>WENV180018078
FSYC01000340
[FSYC] metagenome; soil
145
69
-
Trp
CCA
[ENA]
¢þ
>WENV180018074
FSYC01000283
[FSYC] metagenome; soil
184
109
-
Ala
GGC
[ENA]
¢þ
>WENV180018077
FSYC01000340
[FSYC] metagenome; soil
393
466
+
Gly
TCC
[ENA]
¢þ
>WENV180018071
FSYC01000215
[FSYC] metagenome; soil
548
473
-
Glu
CTC
[ENA]
¢þ
>WENV180018072
FSYC01000230
[FSYC] metagenome; soil
960
1049
+
Ser
CGA
[ENA]
¢þ
>WENV180018076
FSYC01000315
[FSYC] metagenome; soil
1149
1224
+
Lys
CTT
[ENA]
¢þ
>WENV180018063
FSYC01000045
[FSYC] metagenome; soil
1188
1264
+
Arg
CCG
[ENA]
¢þ
>WENV180018085
FSYC01000427
[FSYC] metagenome; soil
1311
1385
+
Thr
CGT
[ENA]
¢þ
>WENV180018090
FSYC01000605
[FSYC] metagenome; soil
1375
1455
+
Leu
TAA
[ENA]
¢þ
>WENV180018064
FSYC01000052
[FSYC] metagenome; soil
1455
1528
+
Ile2
CAT
[ENA]
¢þ
>WENV180018066
FSYC01000112
[FSYC] metagenome; soil
1715
1789
+
Thr
GGT
[ENA]
¢þ
>WENV180018080
FSYC01000350
[FSYC] metagenome; soil
1781
1695
-
Leu
CAG
[ENA]
¢þ
>WENV180018091
FSYC01000608
[FSYC] metagenome; soil
1888
1968
+
Leu
TAA
[ENA]
¢þ
>WENV180018075
FSYC01000303
[FSYC] metagenome; soil
2828
2753
-
Ala
GGC
[ENA]
¢þ
>WENV180018094
FSYC01000653
[FSYC] metagenome; soil
2954
3038
+
Leu
GAG
[ENA]
¢þ
>WENV180018086
FSYC01000510
[FSYC] metagenome; soil
3127
3051
-
Asp
GTC
[ENA]
¢þ
>WENV180018089
FSYC01000603
[FSYC] metagenome; soil
3968
4044
+
Arg
CCT
[ENA]
¢þ
>WENV180018073
FSYC01000231
[FSYC] metagenome; soil
4070
4159
+
Ser
GGA
[ENA]
¢þ
>WENV180018087
FSYC01000538
[FSYC] metagenome; soil
4481
4406
-
Ala
CGC
[ENA]
¢þ
>WENV180018083
FSYC01000400
[FSYC] metagenome; soil
4522
4596
+
Val
TAC
[ENA]
¢þ
>WENV180018084
FSYC01000400
[FSYC] metagenome; soil
4687
4763
+
Asp
GTC
[ENA]
¢þ
>WENV180018079
FSYC01000342
[FSYC] metagenome; soil
4912
4838
-
Val
CAC
[ENA]
¢þ
>WENV180018088
FSYC01000577
[FSYC] metagenome; soil
5493
5567
+
Val
GAC
[ENA]
¢þ
>WENV180018068
FSYC01000145
[FSYC] metagenome; soil
5594
5519
-
Lys
TTT
[ENA]
¢þ
>WENV180018096
FSYC01000666
[FSYC] metagenome; soil
9605
9679
+
Thr
TGT
[ENA]
¢þ
>WENV180018070
FSYC01000185
[FSYC] metagenome; soil
12080
12005
-
Glu
TTC
[ENA]
¢þ
>WENV180018065
FSYC01000085
[FSYC] metagenome; soil
15747
15836
+
Ser
TGA
[ENA]
¢þ
>WENV180018069
FSYC01000147
[FSYC] metagenome; soil
18157
18061
-
SeC
TCA
[ENA]
¢þ
>WENV180018093
FSYC01000623
[FSYC] metagenome; soil
45266
45190
-
Arg
TCT
[ENA]
¢þ
>WENV180018092
FSYC01000623
[FSYC] metagenome; soil
45700
45624
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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