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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180044459
MOXH01000011
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
169
244
+
Trp
CCA
[ENA]
¡û
>WENV180044481
MOXH01000118
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
256
346
+
Ser
TGA
[ENA]
¡û
>WENV180044506
MOXH01009326
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
351
276
-
Trp
CCA
[ENA]
¡û
>WENV180044503
MOXH01005525
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
361
291
-
Sup
TTA
[ENA]
¡û
>WENV180044505
MOXH01009326
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
433
358
-
Glu
TTC
[ENA]
¡û
>WENV180044496
MOXH01000355
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
457
381
-
Asp
GTC
[ENA]
¡û
>WENV180044491
MOXH01000179
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
514
440
-
Val
CAC
[ENA]
¡û
>WENV180044509
MOXH01010680
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
928
854
-
Glu
CTC
[ENA]
¡û
>WENV180044507
MOXH01009419
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
928
1003
+
Val
TAC
[ENA]
¡û
>WENV180044508
MOXH01010676
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
929
854
-
Thr
CGT
[ENA]
¡û
>WENV180044499
MOXH01000932
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
986
912
-
Val
CAC
[ENA]
¡û
>WENV180044504
MOXH01009326
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
995
920
-
Lys
TTT
[ENA]
¡û
>WENV180044492
MOXH01000182
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
1285
1209
-
Pro
GGG
[ENA]
¡û
>WENV180044502
MOXH01002410
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
1396
1469
+
Thr
AGT
[ENA]
¡û
>WENV180044501
MOXH01002321
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
1574
1499
-
Ala
TGC
[ENA]
¡û
>WENV180044488
MOXH01000172
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
1749
1673
-
Ile2
CAT
[ENA]
¡û
>WENV180044500
MOXH01002321
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
1865
1789
-
Ile
GAT
[ENA]
¡û
>WENV180044494
MOXH01000292
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
2465
2541
+
fMet
CAT
[ENA]
¡û
>WENV180044497
MOXH01000472
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
3098
3022
-
Arg
CCT
[ENA]
¡û
>WENV180044493
MOXH01000261
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
3635
3551
-
Leu
GAG
[ENA]
¡û
>WENV180044489
MOXH01000179
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
3879
3954
+
Ala
GGC
[ENA]
¡û
>WENV180044490
MOXH01000179
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
4007
4082
+
Glu
TTC
[ENA]
¡û
>WENV180044482
MOXH01000118
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
4210
4285
+
Gly
GCC
[ENA]
¡û
>WENV180044483
MOXH01000118
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
4389
4462
+
Cys
GCA
[ENA]
¡û
>WENV180044484
MOXH01000118
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
4492
4580
+
Leu
TAA
[ENA]
¡û
>WENV180044498
MOXH01000500
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
4685
4761
+
Arg
CCG
[ENA]
¡û
>WENV180044486
MOXH01000132
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
5017
4927
-
Ser
GCT
[ENA]
¡û
>WENV180044495
MOXH01000296
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
5021
5096
+
Lys
TTT
[ENA]
¡û
>WENV180044485
MOXH01000128
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
6399
6485
+
Leu
CAA
[ENA]
¡û
>WENV180044469
MOXH01000037
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
7231
7157
-
Glu
CTC
[ENA]
¡û
>WENV180044487
MOXH01000150
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
9676
9766
+
Ser
GGA
[ENA]
¡û
>WENV180044470
MOXH01000043
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
9719
9795
+
Pro
TGG
[ENA]
¡û
>WENV180044456
MOXH01000003
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
9957
10032
+
Gly
GCC
[ENA]
¡û
>WENV180044471
MOXH01000043
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
10291
10366
+
His
GTG
[ENA]
¡û
>WENV180044472
MOXH01000043
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
10379
10454
+
Lys
CTT
[ENA]
¡û
>WENV180044475
MOXH01000051
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
10558
10634
+
fMet
CAT
[ENA]
¡û
>WENV180044474
MOXH01000045
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
11620
11544
-
Pro
CGG
[ENA]
¡û
>WENV180044479
MOXH01000053
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
15120
15045
-
Thr
CGT
[ENA]
¡û
>WENV180044480
MOXH01000054
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
16847
16774
-
Gln
CTG
[ENA]
¡û
>WENV180044460
MOXH01000011
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
17213
17288
+
Trp
CCA
[ENA]
¡û
>WENV180044476
MOXH01000052
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
19648
19732
+
Tyr
GTA
[ENA]
¡û
>WENV180044477
MOXH01000052
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
19864
19937
+
Gly
TCC
[ENA]
¡û
>WENV180044478
MOXH01000052
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
20021
20096
+
Thr
GGT
[ENA]
¡û
>WENV180044467
MOXH01000027
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
20836
20760
-
Asp
GTC
[ENA]
¡û
>WENV180044466
MOXH01000027
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
20917
20842
-
Val
TAC
[ENA]
¡û
>WENV180044473
MOXH01000044
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
21768
21857
+
Ser
CGA
[ENA]
¡û
>WENV180044464
MOXH01000017
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
23028
22953
-
Asn
GTT
[ENA]
¡û
>WENV180044468
MOXH01000034
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
25125
25050
-
Phe
GAA
[ENA]
¡û
>WENV180044462
MOXH01000014
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
27696
27619
-
Met
CAT
[ENA]
¡û
>WENV180044465
MOXH01000027
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
27976
27892
-
Leu
TAG
[ENA]
¡û
>WENV180044463
MOXH01000017
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
32843
32919
+
Val
GAC
[ENA]
¡û
>WENV180044461
MOXH01000014
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
34476
34401
-
Thr
TGT
[ENA]
¡û
>WENV180044458
MOXH01000010
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
35386
35300
-
Leu
CAG
[ENA]
¡û
>WENV180044457
MOXH01000004
[MOXH] mollusc metagenome; Phylotype A (SB4); bacterial symbionts from gill
39667
39740
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK