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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[ODDR] human metagenome; G_DNA_Stool
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180700455
ODDR01006125
[ODDR] human metagenome; G_DNA_Stool
31
104
+
Val
CAC
[ENA]
¡û
>WENV180700465
ODDR01009834
[ODDR] human metagenome; G_DNA_Stool
33
106
+
Gln
TTG
[ENA]
¡û
>WENV180700447
ODDR01002415
[ODDR] human metagenome; G_DNA_Stool
36
108
+
Val
GAC
[ENA]
¡û
>WENV180700457
ODDR01006723
[ODDR] human metagenome; G_DNA_Stool
43
117
+
Glu
TTC
[ENA]
¡û
>WENV180700432
ODDR01001199
[ODDR] human metagenome; G_DNA_Stool
75
157
+
Tyr
GTA
[ENA]
¡û
>WENV180700442
ODDR01001582
[ODDR] human metagenome; G_DNA_Stool
81
7
-
Val
TAC
[ENA]
¡û
>WENV180700462
ODDR01008646
[ODDR] human metagenome; G_DNA_Stool
92
167
+
Thr
CGT
[ENA]
¡û
>WENV180700464
ODDR01009597
[ODDR] human metagenome; G_DNA_Stool
101
25
-
fMet
CAT
[ENA]
¡û
>WENV180700450
ODDR01002634
[ODDR] human metagenome; G_DNA_Stool
101
28
-
Arg
ACG
[ENA]
¡û
>WENV180700461
ODDR01008183
[ODDR] human metagenome; G_DNA_Stool
110
34
-
Arg
ACG
[ENA]
¡û
>WENV180700466
ODDR01009834
[ODDR] human metagenome; G_DNA_Stool
118
190
+
Cys
GCA
[ENA]
¡û
>WENV180700428
ODDR01000726
[ODDR] human metagenome; G_DNA_Stool
120
45
-
Glu
TTC
[ENA]
¡û
>WENV180700458
ODDR01006723
[ODDR] human metagenome; G_DNA_Stool
122
197
+
Val
TAC
[ENA]
¡û
>WENV180700437
ODDR01001346
[ODDR] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¡û
>WENV180700405
ODDR01000023
[ODDR] human metagenome; G_DNA_Stool
135
207
+
Asn
GTT
[ENA]
¡û
>WENV180700459
ODDR01007775
[ODDR] human metagenome; G_DNA_Stool
138
64
-
Pro
GGG
[ENA]
¡û
>WENV180700463
ODDR01008728
[ODDR] human metagenome; G_DNA_Stool
146
73
-
Gly
TCC
[ENA]
¡û
>WENV180700444
ODDR01001721
[ODDR] human metagenome; G_DNA_Stool
173
247
+
Ala
TGC
[ENA]
¡û
>WENV180700449
ODDR01002602
[ODDR] human metagenome; G_DNA_Stool
178
253
+
Thr
TGT
[ENA]
¡û
>WENV180700456
ODDR01006503
[ODDR] human metagenome; G_DNA_Stool
180
88
-
Ser
TGA
[ENA]
¡û
>WENV180700420
ODDR01000429
[ODDR] human metagenome; G_DNA_Stool
196
122
-
Ala
TGC
[ENA]
¡û
>WENV180700460
ODDR01008183
[ODDR] human metagenome; G_DNA_Stool
211
123
-
Leu
TAA
[ENA]
¡û
>WENV180700430
ODDR01001032
[ODDR] human metagenome; G_DNA_Stool
217
290
+
Trp
CCA
[ENA]
¡û
>WENV180700454
ODDR01003947
[ODDR] human metagenome; G_DNA_Stool
226
142
-
Leu
TAG
[ENA]
¡û
>WENV180700436
ODDR01001346
[ODDR] human metagenome; G_DNA_Stool
230
157
-
Gly
GCC
[ENA]
¡û
>WENV180700452
ODDR01003389
[ODDR] human metagenome; G_DNA_Stool
231
303
+
Thr
GGT
[ENA]
¡û
>WENV180700453
ODDR01003907
[ODDR] human metagenome; G_DNA_Stool
234
310
+
Ile2
CAT
[ENA]
¡û
>WENV180700439
ODDR01001403
[ODDR] human metagenome; G_DNA_Stool
244
169
-
Glu
CTC
[ENA]
¡û
>WENV180700440
ODDR01001408
[ODDR] human metagenome; G_DNA_Stool
263
346
+
Leu
CAG
[ENA]
¡û
>WENV180700427
ODDR01000726
[ODDR] human metagenome; G_DNA_Stool
274
199
-
Ala
GGC
[ENA]
¡û
>WENV180700448
ODDR01002487
[ODDR] human metagenome; G_DNA_Stool
279
364
+
Ser
TGA
[ENA]
¡û
>WENV180700451
ODDR01002917
[ODDR] human metagenome; G_DNA_Stool
296
370
+
Lys
CTT
[ENA]
¡û
>WENV180700426
ODDR01000693
[ODDR] human metagenome; G_DNA_Stool
315
239
-
Pro
CGG
[ENA]
¡û
>WENV180700446
ODDR01001853
[ODDR] human metagenome; G_DNA_Stool
334
249
-
Ser
TGA
[ENA]
¡û
>WENV180700433
ODDR01001199
[ODDR] human metagenome; G_DNA_Stool
358
431
+
Thr
GGT
[ENA]
¡û
>WENV180700435
ODDR01001268
[ODDR] human metagenome; G_DNA_Stool
366
441
+
Trp
CCA
[ENA]
¡û
>WENV180700410
ODDR01000061
[ODDR] human metagenome; G_DNA_Stool
381
311
-
Met
CAT
[ENA]
¡û
>WENV180700415
ODDR01000316
[ODDR] human metagenome; G_DNA_Stool
384
458
+
Asp
GTC
[ENA]
¡û
>WENV180700445
ODDR01001853
[ODDR] human metagenome; G_DNA_Stool
440
358
-
Tyr
GTA
[ENA]
¡û
>WENV180700438
ODDR01001403
[ODDR] human metagenome; G_DNA_Stool
452
380
-
Gln
CTG
[ENA]
¡û
>WENV180700429
ODDR01001011
[ODDR] human metagenome; G_DNA_Stool
469
393
-
fMet
CAT
[ENA]
¡û
>WENV180700431
ODDR01001097
[ODDR] human metagenome; G_DNA_Stool
484
557
+
Asn
GTT
[ENA]
¡û
>WENV180700443
ODDR01001663
[ODDR] human metagenome; G_DNA_Stool
492
407
-
Ser
GGA
[ENA]
¡û
>WENV180700434
ODDR01001199
[ODDR] human metagenome; G_DNA_Stool
496
570
+
Met
CAT
[ENA]
¡û
>WENV180700416
ODDR01000316
[ODDR] human metagenome; G_DNA_Stool
519
594
+
Phe
GAA
[ENA]
¡û
>WENV180700418
ODDR01000353
[ODDR] human metagenome; G_DNA_Stool
529
604
+
Lys
TTT
[ENA]
¡û
>WENV180700441
ODDR01001520
[ODDR] human metagenome; G_DNA_Stool
545
470
-
Asn
GTT
[ENA]
¡û
>WENV180700408
ODDR01000059
[ODDR] human metagenome; G_DNA_Stool
548
618
+
Val
TAC
[ENA]
¡û
>WENV180700425
ODDR01000587
[ODDR] human metagenome; G_DNA_Stool
555
481
-
Lys
TTT
[ENA]
¡û
>WENV180700423
ODDR01000538
[ODDR] human metagenome; G_DNA_Stool
632
715
+
Leu
TAG
[ENA]
¡û
>WENV180700422
ODDR01000494
[ODDR] human metagenome; G_DNA_Stool
709
782
+
Ala
GGC
[ENA]
¡û
>WENV180700424
ODDR01000553
[ODDR] human metagenome; G_DNA_Stool
815
890
+
His
GTG
[ENA]
¡û
>WENV180700413
ODDR01000151
[ODDR] human metagenome; G_DNA_Stool
941
1016
+
Arg
TCT
[ENA]
¡û
>WENV180700421
ODDR01000482
[ODDR] human metagenome; G_DNA_Stool
1069
996
-
Arg
CCT
[ENA]
¡û
>WENV180700419
ODDR01000353
[ODDR] human metagenome; G_DNA_Stool
1209
1136
-
Thr
TGT
[ENA]
¡û
>WENV180700417
ODDR01000318
[ODDR] human metagenome; G_DNA_Stool
1263
1188
-
Ala
TGC
[ENA]
¡û
>WENV180700414
ODDR01000219
[ODDR] human metagenome; G_DNA_Stool
1359
1284
-
Thr
CGT
[ENA]
¡û
>WENV180700409
ODDR01000061
[ODDR] human metagenome; G_DNA_Stool
1607
1680
+
His
GTG
[ENA]
¡û
>WENV180700406
ODDR01000038
[ODDR] human metagenome; G_DNA_Stool
1632
1716
+
Leu
TAG
[ENA]
¡û
>WENV180700412
ODDR01000143
[ODDR] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¡û
>WENV180700411
ODDR01000063
[ODDR] human metagenome; G_DNA_Stool
1966
2053
+
Ser
CGA
[ENA]
¡û
>WENV180700407
ODDR01000038
[ODDR] human metagenome; G_DNA_Stool
2093
2168
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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