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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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|
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HOW TO USE
tRNA gene List
[ODMJ] human metagenome; G_DNA_Buccal mucosa
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180887724
ODMJ01006125
[ODMJ] human metagenome; G_DNA_Buccal mucosa
31
104
+
Val
CAC
[ENA]
¡û
>WENV180887734
ODMJ01009834
[ODMJ] human metagenome; G_DNA_Buccal mucosa
33
106
+
Gln
TTG
[ENA]
¡û
>WENV180887716
ODMJ01002415
[ODMJ] human metagenome; G_DNA_Buccal mucosa
36
108
+
Val
GAC
[ENA]
¡û
>WENV180887726
ODMJ01006723
[ODMJ] human metagenome; G_DNA_Buccal mucosa
43
117
+
Glu
TTC
[ENA]
¡û
>WENV180887701
ODMJ01001199
[ODMJ] human metagenome; G_DNA_Buccal mucosa
75
157
+
Tyr
GTA
[ENA]
¡û
>WENV180887711
ODMJ01001582
[ODMJ] human metagenome; G_DNA_Buccal mucosa
81
7
-
Val
TAC
[ENA]
¡û
>WENV180887731
ODMJ01008646
[ODMJ] human metagenome; G_DNA_Buccal mucosa
92
167
+
Thr
CGT
[ENA]
¡û
>WENV180887733
ODMJ01009597
[ODMJ] human metagenome; G_DNA_Buccal mucosa
101
25
-
fMet
CAT
[ENA]
¡û
>WENV180887719
ODMJ01002634
[ODMJ] human metagenome; G_DNA_Buccal mucosa
101
28
-
Arg
ACG
[ENA]
¡û
>WENV180887730
ODMJ01008183
[ODMJ] human metagenome; G_DNA_Buccal mucosa
110
34
-
Arg
ACG
[ENA]
¡û
>WENV180887735
ODMJ01009834
[ODMJ] human metagenome; G_DNA_Buccal mucosa
118
190
+
Cys
GCA
[ENA]
¡û
>WENV180887697
ODMJ01000726
[ODMJ] human metagenome; G_DNA_Buccal mucosa
120
45
-
Glu
TTC
[ENA]
¡û
>WENV180887727
ODMJ01006723
[ODMJ] human metagenome; G_DNA_Buccal mucosa
122
197
+
Val
TAC
[ENA]
¡û
>WENV180887706
ODMJ01001346
[ODMJ] human metagenome; G_DNA_Buccal mucosa
129
58
-
Cys
GCA
[ENA]
¡û
>WENV180887674
ODMJ01000023
[ODMJ] human metagenome; G_DNA_Buccal mucosa
135
207
+
Asn
GTT
[ENA]
¡û
>WENV180887728
ODMJ01007775
[ODMJ] human metagenome; G_DNA_Buccal mucosa
138
64
-
Pro
GGG
[ENA]
¡û
>WENV180887732
ODMJ01008728
[ODMJ] human metagenome; G_DNA_Buccal mucosa
146
73
-
Gly
TCC
[ENA]
¡û
>WENV180887713
ODMJ01001721
[ODMJ] human metagenome; G_DNA_Buccal mucosa
173
247
+
Ala
TGC
[ENA]
¡û
>WENV180887718
ODMJ01002602
[ODMJ] human metagenome; G_DNA_Buccal mucosa
178
253
+
Thr
TGT
[ENA]
¡û
>WENV180887725
ODMJ01006503
[ODMJ] human metagenome; G_DNA_Buccal mucosa
180
88
-
Ser
TGA
[ENA]
¡û
>WENV180887689
ODMJ01000429
[ODMJ] human metagenome; G_DNA_Buccal mucosa
196
122
-
Ala
TGC
[ENA]
¡û
>WENV180887729
ODMJ01008183
[ODMJ] human metagenome; G_DNA_Buccal mucosa
211
123
-
Leu
TAA
[ENA]
¡û
>WENV180887699
ODMJ01001032
[ODMJ] human metagenome; G_DNA_Buccal mucosa
217
290
+
Trp
CCA
[ENA]
¡û
>WENV180887723
ODMJ01003947
[ODMJ] human metagenome; G_DNA_Buccal mucosa
226
142
-
Leu
TAG
[ENA]
¡û
>WENV180887705
ODMJ01001346
[ODMJ] human metagenome; G_DNA_Buccal mucosa
230
157
-
Gly
GCC
[ENA]
¡û
>WENV180887721
ODMJ01003389
[ODMJ] human metagenome; G_DNA_Buccal mucosa
231
303
+
Thr
GGT
[ENA]
¡û
>WENV180887722
ODMJ01003907
[ODMJ] human metagenome; G_DNA_Buccal mucosa
234
310
+
Ile2
CAT
[ENA]
¡û
>WENV180887708
ODMJ01001403
[ODMJ] human metagenome; G_DNA_Buccal mucosa
244
169
-
Glu
CTC
[ENA]
¡û
>WENV180887709
ODMJ01001408
[ODMJ] human metagenome; G_DNA_Buccal mucosa
263
346
+
Leu
CAG
[ENA]
¡û
>WENV180887696
ODMJ01000726
[ODMJ] human metagenome; G_DNA_Buccal mucosa
274
199
-
Ala
GGC
[ENA]
¡û
>WENV180887717
ODMJ01002487
[ODMJ] human metagenome; G_DNA_Buccal mucosa
279
364
+
Ser
TGA
[ENA]
¡û
>WENV180887720
ODMJ01002917
[ODMJ] human metagenome; G_DNA_Buccal mucosa
296
370
+
Lys
CTT
[ENA]
¡û
>WENV180887695
ODMJ01000693
[ODMJ] human metagenome; G_DNA_Buccal mucosa
315
239
-
Pro
CGG
[ENA]
¡û
>WENV180887715
ODMJ01001853
[ODMJ] human metagenome; G_DNA_Buccal mucosa
334
249
-
Ser
TGA
[ENA]
¡û
>WENV180887702
ODMJ01001199
[ODMJ] human metagenome; G_DNA_Buccal mucosa
358
431
+
Thr
GGT
[ENA]
¡û
>WENV180887704
ODMJ01001268
[ODMJ] human metagenome; G_DNA_Buccal mucosa
366
441
+
Trp
CCA
[ENA]
¡û
>WENV180887679
ODMJ01000061
[ODMJ] human metagenome; G_DNA_Buccal mucosa
381
311
-
Met
CAT
[ENA]
¡û
>WENV180887684
ODMJ01000316
[ODMJ] human metagenome; G_DNA_Buccal mucosa
384
458
+
Asp
GTC
[ENA]
¡û
>WENV180887714
ODMJ01001853
[ODMJ] human metagenome; G_DNA_Buccal mucosa
440
358
-
Tyr
GTA
[ENA]
¡û
>WENV180887707
ODMJ01001403
[ODMJ] human metagenome; G_DNA_Buccal mucosa
452
380
-
Gln
CTG
[ENA]
¡û
>WENV180887698
ODMJ01001011
[ODMJ] human metagenome; G_DNA_Buccal mucosa
469
393
-
fMet
CAT
[ENA]
¡û
>WENV180887700
ODMJ01001097
[ODMJ] human metagenome; G_DNA_Buccal mucosa
484
557
+
Asn
GTT
[ENA]
¡û
>WENV180887712
ODMJ01001663
[ODMJ] human metagenome; G_DNA_Buccal mucosa
492
407
-
Ser
GGA
[ENA]
¡û
>WENV180887703
ODMJ01001199
[ODMJ] human metagenome; G_DNA_Buccal mucosa
496
570
+
Met
CAT
[ENA]
¡û
>WENV180887685
ODMJ01000316
[ODMJ] human metagenome; G_DNA_Buccal mucosa
519
594
+
Phe
GAA
[ENA]
¡û
>WENV180887687
ODMJ01000353
[ODMJ] human metagenome; G_DNA_Buccal mucosa
529
604
+
Lys
TTT
[ENA]
¡û
>WENV180887710
ODMJ01001520
[ODMJ] human metagenome; G_DNA_Buccal mucosa
545
470
-
Asn
GTT
[ENA]
¡û
>WENV180887677
ODMJ01000059
[ODMJ] human metagenome; G_DNA_Buccal mucosa
548
618
+
Val
TAC
[ENA]
¡û
>WENV180887694
ODMJ01000587
[ODMJ] human metagenome; G_DNA_Buccal mucosa
555
481
-
Lys
TTT
[ENA]
¡û
>WENV180887692
ODMJ01000538
[ODMJ] human metagenome; G_DNA_Buccal mucosa
632
715
+
Leu
TAG
[ENA]
¡û
>WENV180887691
ODMJ01000494
[ODMJ] human metagenome; G_DNA_Buccal mucosa
709
782
+
Ala
GGC
[ENA]
¡û
>WENV180887693
ODMJ01000553
[ODMJ] human metagenome; G_DNA_Buccal mucosa
815
890
+
His
GTG
[ENA]
¡û
>WENV180887682
ODMJ01000151
[ODMJ] human metagenome; G_DNA_Buccal mucosa
941
1016
+
Arg
TCT
[ENA]
¡û
>WENV180887690
ODMJ01000482
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1069
996
-
Arg
CCT
[ENA]
¡û
>WENV180887688
ODMJ01000353
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1209
1136
-
Thr
TGT
[ENA]
¡û
>WENV180887686
ODMJ01000318
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1263
1188
-
Ala
TGC
[ENA]
¡û
>WENV180887683
ODMJ01000219
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1359
1284
-
Thr
CGT
[ENA]
¡û
>WENV180887678
ODMJ01000061
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1607
1680
+
His
GTG
[ENA]
¡û
>WENV180887675
ODMJ01000038
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1632
1716
+
Leu
TAG
[ENA]
¡û
>WENV180887681
ODMJ01000143
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¡û
>WENV180887680
ODMJ01000063
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1966
2053
+
Ser
CGA
[ENA]
¡û
>WENV180887676
ODMJ01000038
[ODMJ] human metagenome; G_DNA_Buccal mucosa
2093
2168
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK