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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[ODNU] human metagenome; G_DNA_Subgingival plaque
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180898735
ODNU01006125
[ODNU] human metagenome; G_DNA_Subgingival plaque
31
104
+
Val
CAC
[ENA]
¡û
>WENV180898745
ODNU01009834
[ODNU] human metagenome; G_DNA_Subgingival plaque
33
106
+
Gln
TTG
[ENA]
¡û
>WENV180898727
ODNU01002415
[ODNU] human metagenome; G_DNA_Subgingival plaque
36
108
+
Val
GAC
[ENA]
¡û
>WENV180898737
ODNU01006723
[ODNU] human metagenome; G_DNA_Subgingival plaque
43
117
+
Glu
TTC
[ENA]
¡û
>WENV180898712
ODNU01001199
[ODNU] human metagenome; G_DNA_Subgingival plaque
75
157
+
Tyr
GTA
[ENA]
¡û
>WENV180898722
ODNU01001582
[ODNU] human metagenome; G_DNA_Subgingival plaque
81
7
-
Val
TAC
[ENA]
¡û
>WENV180898742
ODNU01008646
[ODNU] human metagenome; G_DNA_Subgingival plaque
92
167
+
Thr
CGT
[ENA]
¡û
>WENV180898744
ODNU01009597
[ODNU] human metagenome; G_DNA_Subgingival plaque
101
25
-
fMet
CAT
[ENA]
¡û
>WENV180898730
ODNU01002634
[ODNU] human metagenome; G_DNA_Subgingival plaque
101
28
-
Arg
ACG
[ENA]
¡û
>WENV180898741
ODNU01008183
[ODNU] human metagenome; G_DNA_Subgingival plaque
110
34
-
Arg
ACG
[ENA]
¡û
>WENV180898746
ODNU01009834
[ODNU] human metagenome; G_DNA_Subgingival plaque
118
190
+
Cys
GCA
[ENA]
¡û
>WENV180898708
ODNU01000726
[ODNU] human metagenome; G_DNA_Subgingival plaque
120
45
-
Glu
TTC
[ENA]
¡û
>WENV180898738
ODNU01006723
[ODNU] human metagenome; G_DNA_Subgingival plaque
122
197
+
Val
TAC
[ENA]
¡û
>WENV180898717
ODNU01001346
[ODNU] human metagenome; G_DNA_Subgingival plaque
129
58
-
Cys
GCA
[ENA]
¡û
>WENV180898685
ODNU01000023
[ODNU] human metagenome; G_DNA_Subgingival plaque
135
207
+
Asn
GTT
[ENA]
¡û
>WENV180898739
ODNU01007775
[ODNU] human metagenome; G_DNA_Subgingival plaque
138
64
-
Pro
GGG
[ENA]
¡û
>WENV180898743
ODNU01008728
[ODNU] human metagenome; G_DNA_Subgingival plaque
146
73
-
Gly
TCC
[ENA]
¡û
>WENV180898724
ODNU01001721
[ODNU] human metagenome; G_DNA_Subgingival plaque
173
247
+
Ala
TGC
[ENA]
¡û
>WENV180898729
ODNU01002602
[ODNU] human metagenome; G_DNA_Subgingival plaque
178
253
+
Thr
TGT
[ENA]
¡û
>WENV180898736
ODNU01006503
[ODNU] human metagenome; G_DNA_Subgingival plaque
180
88
-
Ser
TGA
[ENA]
¡û
>WENV180898700
ODNU01000429
[ODNU] human metagenome; G_DNA_Subgingival plaque
196
122
-
Ala
TGC
[ENA]
¡û
>WENV180898740
ODNU01008183
[ODNU] human metagenome; G_DNA_Subgingival plaque
211
123
-
Leu
TAA
[ENA]
¡û
>WENV180898710
ODNU01001032
[ODNU] human metagenome; G_DNA_Subgingival plaque
217
290
+
Trp
CCA
[ENA]
¡û
>WENV180898734
ODNU01003947
[ODNU] human metagenome; G_DNA_Subgingival plaque
226
142
-
Leu
TAG
[ENA]
¡û
>WENV180898716
ODNU01001346
[ODNU] human metagenome; G_DNA_Subgingival plaque
230
157
-
Gly
GCC
[ENA]
¡û
>WENV180898732
ODNU01003389
[ODNU] human metagenome; G_DNA_Subgingival plaque
231
303
+
Thr
GGT
[ENA]
¡û
>WENV180898733
ODNU01003907
[ODNU] human metagenome; G_DNA_Subgingival plaque
234
310
+
Ile2
CAT
[ENA]
¡û
>WENV180898719
ODNU01001403
[ODNU] human metagenome; G_DNA_Subgingival plaque
244
169
-
Glu
CTC
[ENA]
¡û
>WENV180898720
ODNU01001408
[ODNU] human metagenome; G_DNA_Subgingival plaque
263
346
+
Leu
CAG
[ENA]
¡û
>WENV180898707
ODNU01000726
[ODNU] human metagenome; G_DNA_Subgingival plaque
274
199
-
Ala
GGC
[ENA]
¡û
>WENV180898728
ODNU01002487
[ODNU] human metagenome; G_DNA_Subgingival plaque
279
364
+
Ser
TGA
[ENA]
¡û
>WENV180898731
ODNU01002917
[ODNU] human metagenome; G_DNA_Subgingival plaque
296
370
+
Lys
CTT
[ENA]
¡û
>WENV180898706
ODNU01000693
[ODNU] human metagenome; G_DNA_Subgingival plaque
315
239
-
Pro
CGG
[ENA]
¡û
>WENV180898726
ODNU01001853
[ODNU] human metagenome; G_DNA_Subgingival plaque
334
249
-
Ser
TGA
[ENA]
¡û
>WENV180898713
ODNU01001199
[ODNU] human metagenome; G_DNA_Subgingival plaque
358
431
+
Thr
GGT
[ENA]
¡û
>WENV180898715
ODNU01001268
[ODNU] human metagenome; G_DNA_Subgingival plaque
366
441
+
Trp
CCA
[ENA]
¡û
>WENV180898690
ODNU01000061
[ODNU] human metagenome; G_DNA_Subgingival plaque
381
311
-
Met
CAT
[ENA]
¡û
>WENV180898695
ODNU01000316
[ODNU] human metagenome; G_DNA_Subgingival plaque
384
458
+
Asp
GTC
[ENA]
¡û
>WENV180898725
ODNU01001853
[ODNU] human metagenome; G_DNA_Subgingival plaque
440
358
-
Tyr
GTA
[ENA]
¡û
>WENV180898718
ODNU01001403
[ODNU] human metagenome; G_DNA_Subgingival plaque
452
380
-
Gln
CTG
[ENA]
¡û
>WENV180898709
ODNU01001011
[ODNU] human metagenome; G_DNA_Subgingival plaque
469
393
-
fMet
CAT
[ENA]
¡û
>WENV180898711
ODNU01001097
[ODNU] human metagenome; G_DNA_Subgingival plaque
484
557
+
Asn
GTT
[ENA]
¡û
>WENV180898723
ODNU01001663
[ODNU] human metagenome; G_DNA_Subgingival plaque
492
407
-
Ser
GGA
[ENA]
¡û
>WENV180898714
ODNU01001199
[ODNU] human metagenome; G_DNA_Subgingival plaque
496
570
+
Met
CAT
[ENA]
¡û
>WENV180898696
ODNU01000316
[ODNU] human metagenome; G_DNA_Subgingival plaque
519
594
+
Phe
GAA
[ENA]
¡û
>WENV180898698
ODNU01000353
[ODNU] human metagenome; G_DNA_Subgingival plaque
529
604
+
Lys
TTT
[ENA]
¡û
>WENV180898721
ODNU01001520
[ODNU] human metagenome; G_DNA_Subgingival plaque
545
470
-
Asn
GTT
[ENA]
¡û
>WENV180898688
ODNU01000059
[ODNU] human metagenome; G_DNA_Subgingival plaque
548
618
+
Val
TAC
[ENA]
¡û
>WENV180898705
ODNU01000587
[ODNU] human metagenome; G_DNA_Subgingival plaque
555
481
-
Lys
TTT
[ENA]
¡û
>WENV180898703
ODNU01000538
[ODNU] human metagenome; G_DNA_Subgingival plaque
632
715
+
Leu
TAG
[ENA]
¡û
>WENV180898702
ODNU01000494
[ODNU] human metagenome; G_DNA_Subgingival plaque
709
782
+
Ala
GGC
[ENA]
¡û
>WENV180898704
ODNU01000553
[ODNU] human metagenome; G_DNA_Subgingival plaque
815
890
+
His
GTG
[ENA]
¡û
>WENV180898693
ODNU01000151
[ODNU] human metagenome; G_DNA_Subgingival plaque
941
1016
+
Arg
TCT
[ENA]
¡û
>WENV180898701
ODNU01000482
[ODNU] human metagenome; G_DNA_Subgingival plaque
1069
996
-
Arg
CCT
[ENA]
¡û
>WENV180898699
ODNU01000353
[ODNU] human metagenome; G_DNA_Subgingival plaque
1209
1136
-
Thr
TGT
[ENA]
¡û
>WENV180898697
ODNU01000318
[ODNU] human metagenome; G_DNA_Subgingival plaque
1263
1188
-
Ala
TGC
[ENA]
¡û
>WENV180898694
ODNU01000219
[ODNU] human metagenome; G_DNA_Subgingival plaque
1359
1284
-
Thr
CGT
[ENA]
¡û
>WENV180898689
ODNU01000061
[ODNU] human metagenome; G_DNA_Subgingival plaque
1607
1680
+
His
GTG
[ENA]
¡û
>WENV180898686
ODNU01000038
[ODNU] human metagenome; G_DNA_Subgingival plaque
1632
1716
+
Leu
TAG
[ENA]
¡û
>WENV180898692
ODNU01000143
[ODNU] human metagenome; G_DNA_Subgingival plaque
1643
1570
-
Gly
TCC
[ENA]
¡û
>WENV180898691
ODNU01000063
[ODNU] human metagenome; G_DNA_Subgingival plaque
1966
2053
+
Ser
CGA
[ENA]
¡û
>WENV180898687
ODNU01000038
[ODNU] human metagenome; G_DNA_Subgingival plaque
2093
2168
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK