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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OELI] metagenome; 1998
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185333
OELI01001597
[OELI] metagenome; 1998
75
2
-
Ile2
CAT
[ENA]
¡û
>WENV181185321
OELI01000669
[OELI] metagenome; 1998
87
3
-
Leu
GAG
[ENA]
¡û
>WENV181185309
OELI01000147
[OELI] metagenome; 1998
161
85
-
Asp
GTC
[ENA]
¡û
>WENV181185320
OELI01000578
[OELI] metagenome; 1998
207
123
-
Leu
TAG
[ENA]
¡û
>WENV181185326
OELI01001045
[OELI] metagenome; 1998
246
321
+
Trp
CCA
[ENA]
¡û
>WENV181185308
OELI01000147
[OELI] metagenome; 1998
251
177
-
Val
TAC
[ENA]
¡û
>WENV181185315
OELI01000456
[OELI] metagenome; 1998
305
403
+
SeC
TCA
[ENA]
¡û
>WENV181185311
OELI01000264
[OELI] metagenome; 1998
338
262
-
Pro
GGG
[ENA]
¡û
>WENV181185331
OELI01001467
[OELI] metagenome; 1998
526
616
+
Ser
GCT
[ENA]
¡û
>WENV181185329
OELI01001361
[OELI] metagenome; 1998
587
512
-
Thr
CGT
[ENA]
¡û
>WENV181185305
OELI01000006
[OELI] metagenome; 1998
623
548
-
Lys
CTT
[ENA]
¡û
>WENV181185312
OELI01000270
[OELI] metagenome; 1998
810
736
-
Val
CAC
[ENA]
¡û
>WENV181185316
OELI01000460
[OELI] metagenome; 1998
1098
1173
+
Thr
TGT
[ENA]
¡û
>WENV181185317
OELI01000460
[OELI] metagenome; 1998
1191
1277
+
Tyr
GTA
[ENA]
¡û
>WENV181185318
OELI01000460
[OELI] metagenome; 1998
1291
1366
+
Gly
TCC
[ENA]
¡û
>WENV181185319
OELI01000460
[OELI] metagenome; 1998
1392
1466
+
Thr
GGT
[ENA]
¡û
>WENV181185314
OELI01000444
[OELI] metagenome; 1998
1644
1720
+
Arg
TCG
[ENA]
¡û
>WENV181185323
OELI01000796
[OELI] metagenome; 1998
1787
1871
+
Ser
TGA
[ENA]
¡û
>WENV181185330
OELI01001454
[OELI] metagenome; 1998
1926
2000
+
Gly
CCC
[ENA]
¡û
>WENV181185328
OELI01001221
[OELI] metagenome; 1998
2577
2651
+
Gln
TTG
[ENA]
¡û
>WENV181185327
OELI01001212
[OELI] metagenome; 1998
3307
3232
-
Ala
GGC
[ENA]
¡û
>WENV181185322
OELI01000699
[OELI] metagenome; 1998
3334
3406
+
Asn
GTT
[ENA]
¡û
>WENV181185307
OELI01000034
[OELI] metagenome; 1998
4174
4085
-
Ser
GGA
[ENA]
¡û
>WENV181185306
OELI01000034
[OELI] metagenome; 1998
4314
4225
-
Ser
CGA
[ENA]
¡û
>WENV181185332
OELI01001558
[OELI] metagenome; 1998
4333
4259
-
Arg
CCG
[ENA]
¡û
>WENV181185313
OELI01000313
[OELI] metagenome; 1998
4337
4412
+
Glu
TTC
[ENA]
¡û
>WENV181185310
OELI01000255
[OELI] metagenome; 1998
7181
7105
-
His
GTG
[ENA]
¡û
>WENV181185325
OELI01000976
[OELI] metagenome; 1998
10573
10649
+
Glu
CTC
[ENA]
¡û
>WENV181185324
OELI01000930
[OELI] metagenome; 1998
19482
19568
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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