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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OGVQ] freshwater metagenome; freshwater
HIT:
104 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181841143
OGVQ01007798
[OGVQ] freshwater metagenome; freshwater
64
139
+
Ala
GGC
[ENA]
¡û
>WENV181841127
OGVQ01004624
[OGVQ] freshwater metagenome; freshwater
80
156
+
Ile
GAT
[ENA]
¡û
>WENV181841131
OGVQ01004714
[OGVQ] freshwater metagenome; freshwater
93
22
-
Arg
CCG
[ENA]
¡û
>WENV181841142
OGVQ01007250
[OGVQ] freshwater metagenome; freshwater
134
207
+
Lys
CTT
[ENA]
¡û
>WENV181841139
OGVQ01006447
[OGVQ] freshwater metagenome; freshwater
137
211
+
Ile
GAT
[ENA]
¡û
>WENV181841144
OGVQ01007798
[OGVQ] freshwater metagenome; freshwater
159
234
+
Glu
TTC
[ENA]
¡û
>WENV181841112
OGVQ01002076
[OGVQ] freshwater metagenome; freshwater
176
102
-
Gln
CTG
[ENA]
¡û
>WENV181841128
OGVQ01004624
[OGVQ] freshwater metagenome; freshwater
177
252
+
Ala
TGC
[ENA]
¡û
>WENV181841086
OGVQ01000468
[OGVQ] freshwater metagenome; freshwater
185
259
+
Val
TAC
[ENA]
¡û
>WENV181841117
OGVQ01002952
[OGVQ] freshwater metagenome; freshwater
195
266
+
Gln
TTG
[ENA]
¡û
>WENV181841085
OGVQ01000423
[OGVQ] freshwater metagenome; freshwater
201
128
-
Ala
TGC
[ENA]
¡û
>WENV181841089
OGVQ01000588
[OGVQ] freshwater metagenome; freshwater
206
129
-
Arg
ACG
[ENA]
¡û
>WENV181841100
OGVQ01001186
[OGVQ] freshwater metagenome; freshwater
214
285
+
Gly
TCC
[ENA]
¡û
>WENV181841126
OGVQ01004327
[OGVQ] freshwater metagenome; freshwater
215
142
-
Lys
TTT
[ENA]
¡û
>WENV181841111
OGVQ01002066
[OGVQ] freshwater metagenome; freshwater
222
298
+
fMet
CAT
[ENA]
¡û
>WENV181841115
OGVQ01002467
[OGVQ] freshwater metagenome; freshwater
260
334
+
Val
TAC
[ENA]
¡û
>WENV181841121
OGVQ01003896
[OGVQ] freshwater metagenome; freshwater
265
340
+
Val
TAC
[ENA]
¡û
>WENV181841145
OGVQ01007798
[OGVQ] freshwater metagenome; freshwater
266
342
+
Asp
GTC
[ENA]
¡û
>WENV181841132
OGVQ01004818
[OGVQ] freshwater metagenome; freshwater
269
344
+
Gly
TCC
[ENA]
¡û
>WENV181841136
OGVQ01006100
[OGVQ] freshwater metagenome; freshwater
290
365
+
Ile
GAT
[ENA]
¡û
>WENV181841129
OGVQ01004705
[OGVQ] freshwater metagenome; freshwater
291
367
+
Ile2
CAT
[ENA]
¡û
>WENV181841140
OGVQ01006447
[OGVQ] freshwater metagenome; freshwater
303
377
+
Ala
TGC
[ENA]
¡û
>WENV181841124
OGVQ01004140
[OGVQ] freshwater metagenome; freshwater
309
234
-
Gly
GCC
[ENA]
¡û
>WENV181841102
OGVQ01001261
[OGVQ] freshwater metagenome; freshwater
319
243
-
Met
CAT
[ENA]
¡û
>WENV181841133
OGVQ01004987
[OGVQ] freshwater metagenome; freshwater
325
251
-
Asn
GTT
[ENA]
¡û
>WENV181841122
OGVQ01003915
[OGVQ] freshwater metagenome; freshwater
326
400
+
Arg
TCT
[ENA]
¡û
>WENV181841134
OGVQ01005324
[OGVQ] freshwater metagenome; freshwater
330
404
+
Trp
CCA
[ENA]
¡û
>WENV181841110
OGVQ01002006
[OGVQ] freshwater metagenome; freshwater
333
417
+
Leu
TAA
[ENA]
¡û
>WENV181841116
OGVQ01002811
[OGVQ] freshwater metagenome; freshwater
344
256
-
Leu
TAA
[ENA]
¡û
>WENV181841130
OGVQ01004705
[OGVQ] freshwater metagenome; freshwater
373
448
+
Arg
TCT
[ENA]
¡û
>WENV181841071
OGVQ01000100
[OGVQ] freshwater metagenome; freshwater
381
464
+
Leu
CAA
[ENA]
¡û
>WENV181841125
OGVQ01004263
[OGVQ] freshwater metagenome; freshwater
389
462
+
Arg
CCT
[ENA]
¡û
>WENV181841137
OGVQ01006100
[OGVQ] freshwater metagenome; freshwater
394
467
+
Ala
TGC
[ENA]
¡û
>WENV181841123
OGVQ01004140
[OGVQ] freshwater metagenome; freshwater
397
314
-
Leu
TAA
[ENA]
¡û
>WENV181841106
OGVQ01001741
[OGVQ] freshwater metagenome; freshwater
398
474
+
Gln
TTG
[ENA]
¡û
>WENV181841101
OGVQ01001261
[OGVQ] freshwater metagenome; freshwater
410
337
-
Thr
GGT
[ENA]
¡û
>WENV181841107
OGVQ01001815
[OGVQ] freshwater metagenome; freshwater
413
500
+
Ser
TGA
[ENA]
¡û
>WENV181841095
OGVQ01000944
[OGVQ] freshwater metagenome; freshwater
416
489
+
Trp
CCA
[ENA]
¡û
>WENV181841103
OGVQ01001605
[OGVQ] freshwater metagenome; freshwater
426
517
+
Ser
GGA
[ENA]
¡û
>WENV181841141
OGVQ01006731
[OGVQ] freshwater metagenome; freshwater
428
354
-
fMet
CAT
[ENA]
¡û
>WENV181841118
OGVQ01002975
[OGVQ] freshwater metagenome; freshwater
432
509
+
Arg
TCG
[ENA]
¡û
>WENV181841135
OGVQ01006021
[OGVQ] freshwater metagenome; freshwater
444
529
+
Ser
TGA
[ENA]
¡û
>WENV181841087
OGVQ01000468
[OGVQ] freshwater metagenome; freshwater
451
532
+
Leu
TAG
[ENA]
¡û
>WENV181841138
OGVQ01006100
[OGVQ] freshwater metagenome; freshwater
474
546
+
Thr
TGT
[ENA]
¡û
>WENV181841096
OGVQ01000944
[OGVQ] freshwater metagenome; freshwater
495
569
+
Ala
TGC
[ENA]
¡û
>WENV181841120
OGVQ01003404
[OGVQ] freshwater metagenome; freshwater
553
628
+
Lys
TTT
[ENA]
¡û
>WENV181841113
OGVQ01002385
[OGVQ] freshwater metagenome; freshwater
562
489
-
Thr
CGT
[ENA]
¡û
>WENV181841119
OGVQ01002975
[OGVQ] freshwater metagenome; freshwater
600
670
+
Gln
TTG
[ENA]
¡û
>WENV181841088
OGVQ01000468
[OGVQ] freshwater metagenome; freshwater
618
691
+
Thr
TGT
[ENA]
¡û
>WENV181841108
OGVQ01001815
[OGVQ] freshwater metagenome; freshwater
666
741
+
Phe
GAA
[ENA]
¡û
>WENV181841114
OGVQ01002465
[OGVQ] freshwater metagenome; freshwater
725
652
-
Gln
TTG
[ENA]
¡û
>WENV181841109
OGVQ01001815
[OGVQ] freshwater metagenome; freshwater
748
823
+
Met
CAT
[ENA]
¡û
>WENV181841105
OGVQ01001616
[OGVQ] freshwater metagenome; freshwater
769
696
-
Ala
TGC
[ENA]
¡û
>WENV181841098
OGVQ01000957
[OGVQ] freshwater metagenome; freshwater
809
882
+
Arg
CCT
[ENA]
¡û
>WENV181841104
OGVQ01001616
[OGVQ] freshwater metagenome; freshwater
850
777
-
Ile
GAT
[ENA]
¡û
>WENV181841099
OGVQ01001133
[OGVQ] freshwater metagenome; freshwater
906
980
+
Ile2
CAT
[ENA]
¡û
>WENV181841097
OGVQ01000944
[OGVQ] freshwater metagenome; freshwater
996
1069
+
Gln
TTG
[ENA]
¡û
>WENV181841091
OGVQ01000773
[OGVQ] freshwater metagenome; freshwater
1037
953
-
Leu
GAG
[ENA]
¡û
>WENV181841093
OGVQ01000891
[OGVQ] freshwater metagenome; freshwater
1056
1128
+
Gln
CTG
[ENA]
¡û
>WENV181841092
OGVQ01000839
[OGVQ] freshwater metagenome; freshwater
1064
1140
+
Arg
CCG
[ENA]
¡û
>WENV181841094
OGVQ01000891
[OGVQ] freshwater metagenome; freshwater
1142
1215
+
Glu
CTC
[ENA]
¡û
>WENV181841062
OGVQ01000073
[OGVQ] freshwater metagenome; freshwater
1284
1356
+
Ala
TGC
[ENA]
¡û
>WENV181841090
OGVQ01000639
[OGVQ] freshwater metagenome; freshwater
1295
1370
+
Asn
GTT
[ENA]
¡û
>WENV181841081
OGVQ01000375
[OGVQ] freshwater metagenome; freshwater
1545
1621
+
Arg
TCT
[ENA]
¡û
>WENV181841082
OGVQ01000375
[OGVQ] freshwater metagenome; freshwater
1622
1697
+
Leu
TAA
[ENA]
¡û
>WENV181841083
OGVQ01000375
[OGVQ] freshwater metagenome; freshwater
1702
1777
+
Ile2
CAT
[ENA]
¡û
>WENV181841084
OGVQ01000375
[OGVQ] freshwater metagenome; freshwater
1882
1958
+
Leu
CAA
[ENA]
¡û
>WENV181841075
OGVQ01000109
[OGVQ] freshwater metagenome; freshwater
1995
1922
-
Asp
GTC
[ENA]
¡û
>WENV181841047
OGVQ01000022
[OGVQ] freshwater metagenome; freshwater
2505
2591
+
Ser
CGA
[ENA]
¡û
>WENV181841044
OGVQ01000006
[OGVQ] freshwater metagenome; freshwater
2528
2601
+
Trp
CCA
[ENA]
¡û
>WENV181841072
OGVQ01000104
[OGVQ] freshwater metagenome; freshwater
3315
3243
-
Val
TAC
[ENA]
¡û
>WENV181841080
OGVQ01000217
[OGVQ] freshwater metagenome; freshwater
3541
3466
-
Ala
TGC
[ENA]
¡û
>WENV181841063
OGVQ01000073
[OGVQ] freshwater metagenome; freshwater
3602
3686
+
Tyr
GTA
[ENA]
¡û
>WENV181841079
OGVQ01000217
[OGVQ] freshwater metagenome; freshwater
3637
3561
-
Ile
GAT
[ENA]
¡û
>WENV181841064
OGVQ01000073
[OGVQ] freshwater metagenome; freshwater
3762
3833
+
Thr
GGT
[ENA]
¡û
>WENV181841048
OGVQ01000024
[OGVQ] freshwater metagenome; freshwater
5097
5027
-
Gly
TCC
[ENA]
¡û
>WENV181841069
OGVQ01000093
[OGVQ] freshwater metagenome; freshwater
5438
5365
-
Gln
TTG
[ENA]
¡û
>WENV181841051
OGVQ01000032
[OGVQ] freshwater metagenome; freshwater
5686
5613
-
Lys
TTT
[ENA]
¡û
>WENV181841077
OGVQ01000154
[OGVQ] freshwater metagenome; freshwater
6675
6748
+
Asn
GTT
[ENA]
¡û
>WENV181841074
OGVQ01000109
[OGVQ] freshwater metagenome; freshwater
6894
6965
+
Gly
CCC
[ENA]
¡û
>WENV181841058
OGVQ01000052
[OGVQ] freshwater metagenome; freshwater
7326
7254
-
Ile2
CAT
[ENA]
¡û
>WENV181841054
OGVQ01000037
[OGVQ] freshwater metagenome; freshwater
7802
7731
-
Gly
GCC
[ENA]
¡û
>WENV181841061
OGVQ01000072
[OGVQ] freshwater metagenome; freshwater
8672
8601
-
Thr
CGT
[ENA]
¡û
>WENV181841078
OGVQ01000156
[OGVQ] freshwater metagenome; freshwater
10228
10314
+
Ser
TGA
[ENA]
¡û
>WENV181841056
OGVQ01000041
[OGVQ] freshwater metagenome; freshwater
11983
12058
+
Arg
CCT
[ENA]
¡û
>WENV181841057
OGVQ01000051
[OGVQ] freshwater metagenome; freshwater
11986
11897
-
Ser
GCT
[ENA]
¡û
>WENV181841060
OGVQ01000071
[OGVQ] freshwater metagenome; freshwater
12705
12631
-
Arg
ACG
[ENA]
¡û
>WENV181841076
OGVQ01000125
[OGVQ] freshwater metagenome; freshwater
13622
13541
-
Leu
CAG
[ENA]
¡û
>WENV181841073
OGVQ01000107
[OGVQ] freshwater metagenome; freshwater
14170
14241
+
Thr
TGT
[ENA]
¡û
>WENV181841055
OGVQ01000040
[OGVQ] freshwater metagenome; freshwater
15756
15680
-
fMet
CAT
[ENA]
¡û
>WENV181841050
OGVQ01000028
[OGVQ] freshwater metagenome; freshwater
17455
17530
+
Arg
TCT
[ENA]
¡û
>WENV181841070
OGVQ01000099
[OGVQ] freshwater metagenome; freshwater
18016
18089
+
Ala
GGC
[ENA]
¡û
>WENV181841067
OGVQ01000090
[OGVQ] freshwater metagenome; freshwater
18593
18665
+
Phe
GAA
[ENA]
¡û
>WENV181841068
OGVQ01000090
[OGVQ] freshwater metagenome; freshwater
18900
18975
+
Val
GAC
[ENA]
¡û
>WENV181841046
OGVQ01000021
[OGVQ] freshwater metagenome; freshwater
19915
19988
+
Met
CAT
[ENA]
¡û
>WENV181841066
OGVQ01000087
[OGVQ] freshwater metagenome; freshwater
21017
21099
+
Leu
GAG
[ENA]
¡û
>WENV181841065
OGVQ01000086
[OGVQ] freshwater metagenome; freshwater
22590
22508
-
Leu
TAG
[ENA]
¡û
>WENV181841059
OGVQ01000053
[OGVQ] freshwater metagenome; freshwater
25675
25748
+
Pro
GGG
[ENA]
¡û
>WENV181841052
OGVQ01000033
[OGVQ] freshwater metagenome; freshwater
27448
27519
+
Lys
CTT
[ENA]
¡û
>WENV181841049
OGVQ01000026
[OGVQ] freshwater metagenome; freshwater
31386
31314
-
Ala
CGC
[ENA]
¡û
>WENV181841053
OGVQ01000033
[OGVQ] freshwater metagenome; freshwater
40361
40434
+
Pro
CGG
[ENA]
¡û
>WENV181841045
OGVQ01000010
[OGVQ] freshwater metagenome; freshwater
45433
45505
+
Arg
CCG
[ENA]
¡û
>WENV181841043
OGVQ01000003
[OGVQ] freshwater metagenome; freshwater
79987
79914
-
His
GTG
[ENA]
¡û
>WENV181841042
OGVQ01000002
[OGVQ] freshwater metagenome; freshwater
82431
82519
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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