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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHBT] human gut metagenome; feces
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182015828
OHBT01000013
[OHBT] human gut metagenome; feces
107
31
-
Gly
GCC
[ENA]
¡û
>WENV182015837
OHBT01001169
[OHBT] human gut metagenome; feces
219
126
-
Ser
GCT
[ENA]
¡û
>WENV182015826
OHBT01000010
[OHBT] human gut metagenome; feces
318
391
+
Pro
GGG
[ENA]
¡û
>WENV182015836
OHBT01000906
[OHBT] human gut metagenome; feces
342
418
+
Val
TAC
[ENA]
¡û
>WENV182015827
OHBT01000010
[OHBT] human gut metagenome; feces
479
555
+
Val
CAC
[ENA]
¡û
>WENV182015835
OHBT01000523
[OHBT] human gut metagenome; feces
581
657
+
Glu
TTC
[ENA]
¡û
>WENV182015833
OHBT01000098
[OHBT] human gut metagenome; feces
636
564
-
Arg
CCT
[ENA]
¡û
>WENV182015834
OHBT01000289
[OHBT] human gut metagenome; feces
660
744
+
Leu
CAG
[ENA]
¡û
>WENV182015829
OHBT01000027
[OHBT] human gut metagenome; feces
760
835
+
Ala
TGC
[ENA]
¡û
>WENV182015830
OHBT01000027
[OHBT] human gut metagenome; feces
848
921
+
Ile
GAT
[ENA]
¡û
>WENV182015832
OHBT01000038
[OHBT] human gut metagenome; feces
1222
1147
-
Gly
CCC
[ENA]
¡û
>WENV182015831
OHBT01000031
[OHBT] human gut metagenome; feces
1410
1485
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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