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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIGF] human gut metagenome; human gut
HIT:
90 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182418138
OIGF01006861
[OIGF] human gut metagenome; human gut
6
94
+
Ser
GGA
[ENA]
¡û
>WENV182418092
OIGF01001155
[OIGF] human gut metagenome; human gut
8
81
+
Lys
TTT
[ENA]
¡û
>WENV182418095
OIGF01001367
[OIGF] human gut metagenome; human gut
11
83
+
Arg
CCT
[ENA]
¡û
>WENV182418129
OIGF01004938
[OIGF] human gut metagenome; human gut
22
97
+
Gly
CCC
[ENA]
¡û
>WENV182418088
OIGF01000817
[OIGF] human gut metagenome; human gut
43
127
+
Leu
CAA
[ENA]
¡û
>WENV182418148
OIGF01009083
[OIGF] human gut metagenome; human gut
47
131
+
Leu
TAA
[ENA]
¡û
>WENV182418139
OIGF01007030
[OIGF] human gut metagenome; human gut
54
129
+
Pro
TGG
[ENA]
¡û
>WENV182418123
OIGF01004659
[OIGF] human gut metagenome; human gut
102
189
+
Ser
TGA
[ENA]
¡û
>WENV182418141
OIGF01007186
[OIGF] human gut metagenome; human gut
117
43
-
Glu
CTC
[ENA]
¡û
>WENV182418155
OIGF01009984
[OIGF] human gut metagenome; human gut
120
45
-
Gly
TCC
[ENA]
¡û
>WENV182418145
OIGF01008916
[OIGF] human gut metagenome; human gut
134
58
-
fMet
CAT
[ENA]
¡û
>WENV182418140
OIGF01007117
[OIGF] human gut metagenome; human gut
140
69
-
Gln
TTG
[ENA]
¡û
>WENV182418128
OIGF01004834
[OIGF] human gut metagenome; human gut
144
70
-
Gln
TTG
[ENA]
¡û
>WENV182418144
OIGF01008294
[OIGF] human gut metagenome; human gut
150
75
-
His
GTG
[ENA]
¡û
>WENV182418146
OIGF01008963
[OIGF] human gut metagenome; human gut
156
237
+
Leu
TAG
[ENA]
¡û
>WENV182418142
OIGF01007536
[OIGF] human gut metagenome; human gut
158
234
+
Pro
GGG
[ENA]
¡û
>WENV182418118
OIGF01003066
[OIGF] human gut metagenome; human gut
178
252
+
Thr
TGT
[ENA]
¡û
>WENV182418089
OIGF01000865
[OIGF] human gut metagenome; human gut
187
113
-
Met
CAT
[ENA]
¡û
>WENV182418097
OIGF01001372
[OIGF] human gut metagenome; human gut
197
279
+
Leu
CAA
[ENA]
¡û
>WENV182418124
OIGF01004659
[OIGF] human gut metagenome; human gut
222
312
+
Ser
GCT
[ENA]
¡û
>WENV182418150
OIGF01009509
[OIGF] human gut metagenome; human gut
227
300
+
Pro
CGG
[ENA]
¡û
>WENV182418149
OIGF01009313
[OIGF] human gut metagenome; human gut
231
156
-
Asn
GTT
[ENA]
¡û
>WENV182418125
OIGF01004802
[OIGF] human gut metagenome; human gut
242
168
-
Ala
GGC
[ENA]
¡û
>WENV182418154
OIGF01009984
[OIGF] human gut metagenome; human gut
246
173
-
Cys
GCA
[ENA]
¡û
>WENV182418112
OIGF01002434
[OIGF] human gut metagenome; human gut
247
173
-
Glu
CTC
[ENA]
¡û
>WENV182418127
OIGF01004834
[OIGF] human gut metagenome; human gut
252
168
-
Leu
TAG
[ENA]
¡û
>WENV182418117
OIGF01002985
[OIGF] human gut metagenome; human gut
253
179
-
Arg
TCT
[ENA]
¡û
>WENV182418115
OIGF01002725
[OIGF] human gut metagenome; human gut
260
187
-
Pro
CGG
[ENA]
¡û
>WENV182418143
OIGF01008294
[OIGF] human gut metagenome; human gut
285
209
-
Arg
CCG
[ENA]
¡û
>WENV182418098
OIGF01001406
[OIGF] human gut metagenome; human gut
287
216
-
Gln
CTG
[ENA]
¡û
>WENV182418147
OIGF01009026
[OIGF] human gut metagenome; human gut
301
373
+
Pro
TGG
[ENA]
¡û
>WENV182418113
OIGF01002640
[OIGF] human gut metagenome; human gut
330
245
-
Tyr
GTA
[ENA]
¡û
>WENV182418153
OIGF01009984
[OIGF] human gut metagenome; human gut
333
259
-
Gly
GCC
[ENA]
¡û
>WENV182418126
OIGF01004834
[OIGF] human gut metagenome; human gut
339
263
-
Met
CAT
[ENA]
¡û
>WENV182418114
OIGF01002725
[OIGF] human gut metagenome; human gut
363
290
-
Gln
CTG
[ENA]
¡û
>WENV182418152
OIGF01009849
[OIGF] human gut metagenome; human gut
366
440
+
Gly
TCC
[ENA]
¡û
>WENV182418151
OIGF01009664
[OIGF] human gut metagenome; human gut
430
521
+
Ser
GGA
[ENA]
¡û
>WENV182418130
OIGF01005806
[OIGF] human gut metagenome; human gut
476
403
-
Ala
CGC
[ENA]
¡û
>WENV182418072
OIGF01000105
[OIGF] human gut metagenome; human gut
490
416
-
Ile2
CAT
[ENA]
¡û
>WENV182418090
OIGF01001015
[OIGF] human gut metagenome; human gut
509
583
+
Asn
GTT
[ENA]
¡û
>WENV182418116
OIGF01002809
[OIGF] human gut metagenome; human gut
537
463
-
Cys
GCA
[ENA]
¡û
>WENV182418135
OIGF01006572
[OIGF] human gut metagenome; human gut
571
646
+
Arg
TCT
[ENA]
¡û
>WENV182418122
OIGF01003786
[OIGF] human gut metagenome; human gut
590
516
-
Gly
TCC
[ENA]
¡û
>WENV182418099
OIGF01001430
[OIGF] human gut metagenome; human gut
590
517
-
Lys
CTT
[ENA]
¡û
>WENV182418077
OIGF01000325
[OIGF] human gut metagenome; human gut
604
679
+
Val
GAC
[ENA]
¡û
>WENV182418085
OIGF01000537
[OIGF] human gut metagenome; human gut
605
693
+
Ser
GGA
[ENA]
¡û
>WENV182418069
OIGF01000039
[OIGF] human gut metagenome; human gut
608
532
-
Asp
GTC
[ENA]
¡û
>WENV182418096
OIGF01001369
[OIGF] human gut metagenome; human gut
609
524
-
Ser
TGA
[ENA]
¡û
>WENV182418132
OIGF01006016
[OIGF] human gut metagenome; human gut
653
578
-
Lys
TTT
[ENA]
¡û
>WENV182418136
OIGF01006572
[OIGF] human gut metagenome; human gut
654
730
+
His
GTG
[ENA]
¡û
>WENV182418121
OIGF01003786
[OIGF] human gut metagenome; human gut
669
594
-
Thr
TGT
[ENA]
¡û
>WENV182418119
OIGF01003249
[OIGF] human gut metagenome; human gut
672
587
-
Ser
TGA
[ENA]
¡û
>WENV182418133
OIGF01006316
[OIGF] human gut metagenome; human gut
677
753
+
Val
CAC
[ENA]
¡û
>WENV182418111
OIGF01002434
[OIGF] human gut metagenome; human gut
689
602
-
Ser
GCT
[ENA]
¡û
>WENV182418066
OIGF01000025
[OIGF] human gut metagenome; human gut
717
793
+
Arg
ACG
[ENA]
¡û
>WENV182418131
OIGF01006016
[OIGF] human gut metagenome; human gut
732
657
-
Val
TAC
[ENA]
¡û
>WENV182418100
OIGF01001523
[OIGF] human gut metagenome; human gut
737
662
-
Pro
TGG
[ENA]
¡û
>WENV182418137
OIGF01006599
[OIGF] human gut metagenome; human gut
743
669
-
Arg
CCT
[ENA]
¡û
>WENV182418106
OIGF01002140
[OIGF] human gut metagenome; human gut
763
689
-
His
GTG
[ENA]
¡û
>WENV182418134
OIGF01006463
[OIGF] human gut metagenome; human gut
780
705
-
Lys
TTT
[ENA]
¡û
>WENV182418091
OIGF01001024
[OIGF] human gut metagenome; human gut
822
749
-
Gly
CCC
[ENA]
¡û
>WENV182418104
OIGF01001979
[OIGF] human gut metagenome; human gut
882
966
+
Leu
CAA
[ENA]
¡û
>WENV182418108
OIGF01002326
[OIGF] human gut metagenome; human gut
892
820
-
Glu
TTC
[ENA]
¡û
>WENV182418102
OIGF01001783
[OIGF] human gut metagenome; human gut
930
856
-
Ala
GGC
[ENA]
¡û
>WENV182418110
OIGF01002404
[OIGF] human gut metagenome; human gut
968
893
-
His
GTG
[ENA]
¡û
>WENV182418094
OIGF01001321
[OIGF] human gut metagenome; human gut
1089
1160
+
Gln
CTG
[ENA]
¡û
>WENV182418109
OIGF01002374
[OIGF] human gut metagenome; human gut
1089
1162
+
Lys
CTT
[ENA]
¡û
>WENV182418120
OIGF01003452
[OIGF] human gut metagenome; human gut
1115
1190
+
Ile2
CAT
[ENA]
¡û
>WENV182418075
OIGF01000265
[OIGF] human gut metagenome; human gut
1173
1246
+
Trp
CCA
[ENA]
¡û
>WENV182418101
OIGF01001773
[OIGF] human gut metagenome; human gut
1218
1293
+
Pro
GGG
[ENA]
¡û
>WENV182418073
OIGF01000158
[OIGF] human gut metagenome; human gut
1245
1317
+
Arg
CCT
[ENA]
¡û
>WENV182418087
OIGF01000791
[OIGF] human gut metagenome; human gut
1368
1443
+
Lys
CTT
[ENA]
¡û
>WENV182418084
OIGF01000505
[OIGF] human gut metagenome; human gut
1370
1296
-
Ala
TGC
[ENA]
¡û
>WENV182418093
OIGF01001245
[OIGF] human gut metagenome; human gut
1373
1448
+
Thr
GGT
[ENA]
¡û
>WENV182418103
OIGF01001924
[OIGF] human gut metagenome; human gut
1389
1475
+
Leu
CAG
[ENA]
¡û
>WENV182418083
OIGF01000505
[OIGF] human gut metagenome; human gut
1475
1399
-
Ile
GAT
[ENA]
¡û
>WENV182418107
OIGF01002205
[OIGF] human gut metagenome; human gut
1538
1612
+
Met
CAT
[ENA]
¡û
>WENV182418086
OIGF01000597
[OIGF] human gut metagenome; human gut
1564
1638
+
Thr
TGT
[ENA]
¡û
>WENV182418105
OIGF01002042
[OIGF] human gut metagenome; human gut
1565
1641
+
Met
CAT
[ENA]
¡û
>WENV182418079
OIGF01000386
[OIGF] human gut metagenome; human gut
2070
2143
+
fMet
CAT
[ENA]
¡û
>WENV182418080
OIGF01000445
[OIGF] human gut metagenome; human gut
2206
2131
-
Val
TAC
[ENA]
¡û
>WENV182418078
OIGF01000376
[OIGF] human gut metagenome; human gut
2318
2247
-
Gln
TTG
[ENA]
¡û
>WENV182418082
OIGF01000474
[OIGF] human gut metagenome; human gut
2441
2515
+
Asp
GTC
[ENA]
¡û
>WENV182418081
OIGF01000459
[OIGF] human gut metagenome; human gut
2624
2698
+
Ile2
CAT
[ENA]
¡û
>WENV182418076
OIGF01000266
[OIGF] human gut metagenome; human gut
2748
2819
+
Gln
TTG
[ENA]
¡û
>WENV182418074
OIGF01000225
[OIGF] human gut metagenome; human gut
3053
3136
+
Tyr
GTA
[ENA]
¡û
>WENV182418070
OIGF01000066
[OIGF] human gut metagenome; human gut
3706
3779
+
Gly
GCC
[ENA]
¡û
>WENV182418068
OIGF01000039
[OIGF] human gut metagenome; human gut
4046
3971
-
Glu
TTC
[ENA]
¡û
>WENV182418071
OIGF01000096
[OIGF] human gut metagenome; human gut
4081
3999
-
Leu
TAG
[ENA]
¡û
>WENV182418067
OIGF01000034
[OIGF] human gut metagenome; human gut
5731
5804
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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