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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIGQ] human gut metagenome; human gut
HIT:
134 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182421240
OIGQ01009901
[OIGQ] human gut metagenome; human gut
28
104
+
Pro
TGG
[ENA]
¡û
>WENV182421233
OIGQ01008209
[OIGQ] human gut metagenome; human gut
31
106
+
Gly
GCC
[ENA]
¡û
>WENV182421194
OIGQ01001893
[OIGQ] human gut metagenome; human gut
62
136
+
Cys
GCA
[ENA]
¡û
>WENV182421203
OIGQ01002668
[OIGQ] human gut metagenome; human gut
64
136
+
Thr
GGT
[ENA]
¡û
>WENV182421210
OIGQ01003140
[OIGQ] human gut metagenome; human gut
72
-1
-
Thr
CGT
[ENA]
¡û
>WENV182421227
OIGQ01007496
[OIGQ] human gut metagenome; human gut
87
14
-
Arg
CCT
[ENA]
¡û
>WENV182421218
OIGQ01004786
[OIGQ] human gut metagenome; human gut
87
161
+
Gly
TCC
[ENA]
¡û
>WENV182421219
OIGQ01004800
[OIGQ] human gut metagenome; human gut
94
170
+
Asn
GTT
[ENA]
¡û
>WENV182421237
OIGQ01009370
[OIGQ] human gut metagenome; human gut
118
43
-
Glu
TTC
[ENA]
¡û
>WENV182421158
OIGQ01000900
[OIGQ] human gut metagenome; human gut
143
217
+
Pro
TGG
[ENA]
¡û
>WENV182421136
OIGQ01000275
[OIGQ] human gut metagenome; human gut
154
227
+
Asp
GTC
[ENA]
¡û
>WENV182421223
OIGQ01005864
[OIGQ] human gut metagenome; human gut
157
86
-
Gln
TTG
[ENA]
¡û
>WENV182421220
OIGQ01004864
[OIGQ] human gut metagenome; human gut
160
86
-
Ile2
CAT
[ENA]
¡û
>WENV182421239
OIGQ01009887
[OIGQ] human gut metagenome; human gut
163
74
-
Ser
GGA
[ENA]
¡û
>WENV182421134
OIGQ01000182
[OIGQ] human gut metagenome; human gut
166
83
-
Tyr
GTA
[ENA]
¡û
>WENV182421234
OIGQ01008560
[OIGQ] human gut metagenome; human gut
194
265
+
Trp
CCA
[ENA]
¡û
>WENV182421228
OIGQ01007759
[OIGQ] human gut metagenome; human gut
211
286
+
Thr
GGT
[ENA]
¡û
>WENV182421159
OIGQ01000900
[OIGQ] human gut metagenome; human gut
248
318
+
Gly
TCC
[ENA]
¡û
>WENV182421222
OIGQ01005625
[OIGQ] human gut metagenome; human gut
275
200
-
Thr
CGT
[ENA]
¡û
>WENV182421221
OIGQ01005190
[OIGQ] human gut metagenome; human gut
281
206
-
Gly
CCC
[ENA]
¡û
>WENV182421229
OIGQ01007764
[OIGQ] human gut metagenome; human gut
295
378
+
Leu
TAA
[ENA]
¡û
>WENV182421238
OIGQ01009887
[OIGQ] human gut metagenome; human gut
300
214
-
Ser
TGA
[ENA]
¡û
>WENV182421177
OIGQ01001148
[OIGQ] human gut metagenome; human gut
300
225
-
Ile2
CAT
[ENA]
¡û
>WENV182421160
OIGQ01000900
[OIGQ] human gut metagenome; human gut
339
414
+
Arg
TCT
[ENA]
¡û
>WENV182421232
OIGQ01007864
[OIGQ] human gut metagenome; human gut
363
437
+
Gly
GCC
[ENA]
¡û
>WENV182421213
OIGQ01003718
[OIGQ] human gut metagenome; human gut
367
440
+
Ala
TGC
[ENA]
¡û
>WENV182421236
OIGQ01008888
[OIGQ] human gut metagenome; human gut
381
455
+
Pro
CGG
[ENA]
¡û
>WENV182421149
OIGQ01000603
[OIGQ] human gut metagenome; human gut
404
477
+
fMet
CAT
[ENA]
¡û
>WENV182421231
OIGQ01007852
[OIGQ] human gut metagenome; human gut
442
367
-
Gln
CTG
[ENA]
¡û
>WENV182421161
OIGQ01000900
[OIGQ] human gut metagenome; human gut
444
519
+
His
GTG
[ENA]
¡û
>WENV182421154
OIGQ01000814
[OIGQ] human gut metagenome; human gut
457
533
+
Arg
ACG
[ENA]
¡û
>WENV182421235
OIGQ01008664
[OIGQ] human gut metagenome; human gut
472
395
-
Asp
GTC
[ENA]
¡û
>WENV182421214
OIGQ01003718
[OIGQ] human gut metagenome; human gut
499
574
+
Ile
GAT
[ENA]
¡û
>WENV182421225
OIGQ01007072
[OIGQ] human gut metagenome; human gut
508
434
-
Ala
GGC
[ENA]
¡û
>WENV182421230
OIGQ01007852
[OIGQ] human gut metagenome; human gut
609
533
-
Glu
CTC
[ENA]
¡û
>WENV182421187
OIGQ01001594
[OIGQ] human gut metagenome; human gut
610
537
-
Lys
CTT
[ENA]
¡û
>WENV182421212
OIGQ01003237
[OIGQ] human gut metagenome; human gut
611
687
+
fMet
CAT
[ENA]
¡û
>WENV182421226
OIGQ01007270
[OIGQ] human gut metagenome; human gut
635
559
-
Asn
GTT
[ENA]
¡û
>WENV182421215
OIGQ01003718
[OIGQ] human gut metagenome; human gut
674
748
+
Ala
TGC
[ENA]
¡û
>WENV182421208
OIGQ01002983
[OIGQ] human gut metagenome; human gut
680
606
-
Thr
TGT
[ENA]
¡û
>WENV182421186
OIGQ01001594
[OIGQ] human gut metagenome; human gut
688
614
-
Glu
CTC
[ENA]
¡û
>WENV182421162
OIGQ01000900
[OIGQ] human gut metagenome; human gut
703
779
+
Ile
GAT
[ENA]
¡û
>WENV182421217
OIGQ01004620
[OIGQ] human gut metagenome; human gut
759
842
+
Leu
GAG
[ENA]
¡û
>WENV182421202
OIGQ01002610
[OIGQ] human gut metagenome; human gut
802
875
+
Lys
CTT
[ENA]
¡û
>WENV182421224
OIGQ01005985
[OIGQ] human gut metagenome; human gut
838
763
-
Pro
TGG
[ENA]
¡û
>WENV182421185
OIGQ01001582
[OIGQ] human gut metagenome; human gut
897
971
+
Met
CAT
[ENA]
¡û
>WENV182421209
OIGQ01003102
[OIGQ] human gut metagenome; human gut
904
819
-
Tyr
GTA
[ENA]
¡û
>WENV182421152
OIGQ01000767
[OIGQ] human gut metagenome; human gut
930
1003
+
Trp
CCA
[ENA]
¡û
>WENV182421188
OIGQ01001625
[OIGQ] human gut metagenome; human gut
949
1025
+
Arg
CCG
[ENA]
¡û
>WENV182421198
OIGQ01002171
[OIGQ] human gut metagenome; human gut
1083
1157
+
Ile
GAT
[ENA]
¡û
>WENV182421171
OIGQ01001033
[OIGQ] human gut metagenome; human gut
1085
1159
+
Asp
GTC
[ENA]
¡û
>WENV182421206
OIGQ01002784
[OIGQ] human gut metagenome; human gut
1125
1039
-
Leu
CAG
[ENA]
¡û
>WENV182421216
OIGQ01004491
[OIGQ] human gut metagenome; human gut
1144
1072
-
Glu
CTC
[ENA]
¡û
>WENV182421197
OIGQ01002144
[OIGQ] human gut metagenome; human gut
1195
1102
-
Ser
GCT
[ENA]
¡û
>WENV182421200
OIGQ01002490
[OIGQ] human gut metagenome; human gut
1213
1301
+
Ser
CGA
[ENA]
¡û
>WENV182421189
OIGQ01001635
[OIGQ] human gut metagenome; human gut
1216
1143
-
Phe
GAA
[ENA]
¡û
>WENV182421201
OIGQ01002491
[OIGQ] human gut metagenome; human gut
1251
1323
+
Cys
GCA
[ENA]
¡û
>WENV182421190
OIGQ01001681
[OIGQ] human gut metagenome; human gut
1273
1348
+
Phe
GAA
[ENA]
¡û
>WENV182421211
OIGQ01003150
[OIGQ] human gut metagenome; human gut
1304
1392
+
Ser
GGA
[ENA]
¡û
>WENV182421196
OIGQ01002144
[OIGQ] human gut metagenome; human gut
1315
1228
-
Ser
TGA
[ENA]
¡û
>WENV182421199
OIGQ01002272
[OIGQ] human gut metagenome; human gut
1357
1448
+
Ser
GGA
[ENA]
¡û
>WENV182421191
OIGQ01001681
[OIGQ] human gut metagenome; human gut
1378
1453
+
Gly
GCC
[ENA]
¡û
>WENV182421151
OIGQ01000709
[OIGQ] human gut metagenome; human gut
1422
1497
+
Gly
CCC
[ENA]
¡û
>WENV182421204
OIGQ01002668
[OIGQ] human gut metagenome; human gut
1424
1497
+
Trp
CCA
[ENA]
¡û
>WENV182421192
OIGQ01001838
[OIGQ] human gut metagenome; human gut
1460
1387
-
Lys
TTT
[ENA]
¡û
>WENV182421193
OIGQ01001871
[OIGQ] human gut metagenome; human gut
1473
1546
+
Trp
CCA
[ENA]
¡û
>WENV182421182
OIGQ01001454
[OIGQ] human gut metagenome; human gut
1478
1405
-
Lys
CTT
[ENA]
¡û
>WENV182421180
OIGQ01001388
[OIGQ] human gut metagenome; human gut
1489
1560
+
Gln
TTG
[ENA]
¡û
>WENV182421183
OIGQ01001537
[OIGQ] human gut metagenome; human gut
1528
1601
+
Gly
GCC
[ENA]
¡û
>WENV182421179
OIGQ01001378
[OIGQ] human gut metagenome; human gut
1570
1644
+
Thr
TGT
[ENA]
¡û
>WENV182421207
OIGQ01002900
[OIGQ] human gut metagenome; human gut
1572
1497
-
Ala
GGC
[ENA]
¡û
>WENV182421184
OIGQ01001537
[OIGQ] human gut metagenome; human gut
1615
1699
+
Leu
TAA
[ENA]
¡û
>WENV182421111
OIGQ01000027
[OIGQ] human gut metagenome; human gut
1642
1727
+
Ser
TGA
[ENA]
¡û
>WENV182421173
OIGQ01001093
[OIGQ] human gut metagenome; human gut
1662
1748
+
Leu
TAA
[ENA]
¡û
>WENV182421155
OIGQ01000826
[OIGQ] human gut metagenome; human gut
1696
1772
+
Ile
GAT
[ENA]
¡û
>WENV182421156
OIGQ01000826
[OIGQ] human gut metagenome; human gut
1801
1875
+
Ala
TGC
[ENA]
¡û
>WENV182421170
OIGQ01001017
[OIGQ] human gut metagenome; human gut
1885
1807
-
His
GTG
[ENA]
¡û
>WENV182421157
OIGQ01000890
[OIGQ] human gut metagenome; human gut
1890
1816
-
Pro
GGG
[ENA]
¡û
>WENV182421205
OIGQ01002726
[OIGQ] human gut metagenome; human gut
1952
2028
+
Val
CAC
[ENA]
¡û
>WENV182421133
OIGQ01000180
[OIGQ] human gut metagenome; human gut
2156
2230
+
His
GTG
[ENA]
¡û
>WENV182421143
OIGQ01000426
[OIGQ] human gut metagenome; human gut
2279
2361
+
Leu
TAG
[ENA]
¡û
>WENV182421195
OIGQ01001939
[OIGQ] human gut metagenome; human gut
2617
2691
+
Asp
GTC
[ENA]
¡û
>WENV182421131
OIGQ01000148
[OIGQ] human gut metagenome; human gut
2765
2690
-
Val
TAC
[ENA]
¡û
>WENV182421181
OIGQ01001402
[OIGQ] human gut metagenome; human gut
2883
2812
-
Gln
CTG
[ENA]
¡û
>WENV182421153
OIGQ01000782
[OIGQ] human gut metagenome; human gut
2903
2831
-
Arg
CCT
[ENA]
¡û
>WENV182421128
OIGQ01000139
[OIGQ] human gut metagenome; human gut
3014
3089
+
Trp
CCA
[ENA]
¡û
>WENV182421174
OIGQ01001093
[OIGQ] human gut metagenome; human gut
3112
3184
+
Glu
TTC
[ENA]
¡û
>WENV182421129
OIGQ01000139
[OIGQ] human gut metagenome; human gut
3266
3342
+
Asp
GTC
[ENA]
¡û
>WENV182421150
OIGQ01000696
[OIGQ] human gut metagenome; human gut
3300
3373
+
Ala
CGC
[ENA]
¡û
>WENV182421178
OIGQ01001209
[OIGQ] human gut metagenome; human gut
3344
3273
-
Gln
TTG
[ENA]
¡û
>WENV182421130
OIGQ01000139
[OIGQ] human gut metagenome; human gut
3346
3421
+
Thr
GGT
[ENA]
¡û
>WENV182421175
OIGQ01001093
[OIGQ] human gut metagenome; human gut
3397
3469
+
Asn
GTT
[ENA]
¡û
>WENV182421116
OIGQ01000062
[OIGQ] human gut metagenome; human gut
3400
3327
-
Lys
TTT
[ENA]
¡û
>WENV182421172
OIGQ01001035
[OIGQ] human gut metagenome; human gut
3516
3442
-
Met
CAT
[ENA]
¡û
>WENV182421146
OIGQ01000571
[OIGQ] human gut metagenome; human gut
3551
3627
+
Met
CAT
[ENA]
¡û
>WENV182421176
OIGQ01001093
[OIGQ] human gut metagenome; human gut
3552
3623
+
Cys
GCA
[ENA]
¡û
>WENV182421147
OIGQ01000571
[OIGQ] human gut metagenome; human gut
3719
3790
+
Glu
TTC
[ENA]
¡û
>WENV182421141
OIGQ01000370
[OIGQ] human gut metagenome; human gut
3870
3951
+
Leu
TAG
[ENA]
¡û
>WENV182421163
OIGQ01000900
[OIGQ] human gut metagenome; human gut
3943
4017
+
Asn
GTT
[ENA]
¡û
>WENV182421164
OIGQ01000900
[OIGQ] human gut metagenome; human gut
4020
4093
+
Glu
TTC
[ENA]
¡û
>WENV182421124
OIGQ01000102
[OIGQ] human gut metagenome; human gut
4046
3973
-
Thr
CGT
[ENA]
¡û
>WENV182421144
OIGQ01000465
[OIGQ] human gut metagenome; human gut
4085
4006
-
Leu
CAA
[ENA]
¡û
>WENV182421126
OIGQ01000120
[OIGQ] human gut metagenome; human gut
4086
4160
+
Asp
GTC
[ENA]
¡û
>WENV182421165
OIGQ01000900
[OIGQ] human gut metagenome; human gut
4103
4175
+
Thr
TGT
[ENA]
¡û
>WENV182421112
OIGQ01000034
[OIGQ] human gut metagenome; human gut
4124
4048
-
Met
CAT
[ENA]
¡û
>WENV182421166
OIGQ01000900
[OIGQ] human gut metagenome; human gut
4179
4254
+
Ile2
CAT
[ENA]
¡û
>WENV182421167
OIGQ01000900
[OIGQ] human gut metagenome; human gut
4270
4344
+
Asp
GTC
[ENA]
¡û
>WENV182421168
OIGQ01000900
[OIGQ] human gut metagenome; human gut
4370
4444
+
Val
TAC
[ENA]
¡û
>WENV182421148
OIGQ01000594
[OIGQ] human gut metagenome; human gut
4376
4450
+
Ile2
CAT
[ENA]
¡û
>WENV182421169
OIGQ01000900
[OIGQ] human gut metagenome; human gut
4448
4531
+
Tyr
GTA
[ENA]
¡û
>WENV182421142
OIGQ01000411
[OIGQ] human gut metagenome; human gut
4911
4826
-
Ser
TGA
[ENA]
¡û
>WENV182421138
OIGQ01000309
[OIGQ] human gut metagenome; human gut
5140
5066
-
Ala
GGC
[ENA]
¡û
>WENV182421145
OIGQ01000513
[OIGQ] human gut metagenome; human gut
5187
5261
+
Arg
TCT
[ENA]
¡û
>WENV182421125
OIGQ01000112
[OIGQ] human gut metagenome; human gut
5377
5306
-
Gln
CTG
[ENA]
¡û
>WENV182421139
OIGQ01000354
[OIGQ] human gut metagenome; human gut
5908
5824
-
Leu
CAA
[ENA]
¡û
>WENV182421135
OIGQ01000213
[OIGQ] human gut metagenome; human gut
6171
6242
+
Gln
CTG
[ENA]
¡û
>WENV182421140
OIGQ01000356
[OIGQ] human gut metagenome; human gut
6578
6505
-
Gly
CCC
[ENA]
¡û
>WENV182421137
OIGQ01000304
[OIGQ] human gut metagenome; human gut
7617
7545
-
Pro
TGG
[ENA]
¡û
>WENV182421113
OIGQ01000037
[OIGQ] human gut metagenome; human gut
7902
7828
-
Ile2
CAT
[ENA]
¡û
>WENV182421127
OIGQ01000121
[OIGQ] human gut metagenome; human gut
8162
8087
-
Pro
GGG
[ENA]
¡û
>WENV182421117
OIGQ01000070
[OIGQ] human gut metagenome; human gut
9127
9054
-
Gly
CCC
[ENA]
¡û
>WENV182421114
OIGQ01000040
[OIGQ] human gut metagenome; human gut
10236
10165
-
Gln
TTG
[ENA]
¡û
>WENV182421123
OIGQ01000101
[OIGQ] human gut metagenome; human gut
10775
10847
+
Cys
GCA
[ENA]
¡û
>WENV182421110
OIGQ01000024
[OIGQ] human gut metagenome; human gut
10801
10716
-
Ser
TGA
[ENA]
¡û
>WENV182421122
OIGQ01000086
[OIGQ] human gut metagenome; human gut
11755
11682
-
Pro
CGG
[ENA]
¡û
>WENV182421121
OIGQ01000086
[OIGQ] human gut metagenome; human gut
11843
11770
-
Phe
GAA
[ENA]
¡û
>WENV182421132
OIGQ01000151
[OIGQ] human gut metagenome; human gut
11880
11806
-
Ala
GGC
[ENA]
¡û
>WENV182421118
OIGQ01000071
[OIGQ] human gut metagenome; human gut
12238
12325
+
Ser
GCT
[ENA]
¡û
>WENV182421119
OIGQ01000071
[OIGQ] human gut metagenome; human gut
12403
12475
+
Glu
CTC
[ENA]
¡û
>WENV182421115
OIGQ01000041
[OIGQ] human gut metagenome; human gut
12662
12734
+
Glu
TTC
[ENA]
¡û
>WENV182421120
OIGQ01000076
[OIGQ] human gut metagenome; human gut
14346
14264
-
Leu
TAG
[ENA]
¡û
>WENV182421109
OIGQ01000010
[OIGQ] human gut metagenome; human gut
18745
18818
+
fMet
CAT
[ENA]
¡û
>WENV182421108
OIGQ01000003
[OIGQ] human gut metagenome; human gut
36769
36695
-
Asn
GTT
[ENA]
¡û
>WENV182421107
OIGQ01000001
[OIGQ] human gut metagenome; human gut
64743
64671
-
Arg
CCT
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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