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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIIH] human gut metagenome; human gut
HIT:
99 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182431231
OIIH01002337
[OIIH] human gut metagenome; human gut
22
96
+
Ala
GGC
[ENA]
¡û
>WENV182431216
OIIH01001655
[OIIH] human gut metagenome; human gut
23
111
+
Ser
GGA
[ENA]
¡û
>WENV182431279
OIIH01009196
[OIIH] human gut metagenome; human gut
54
129
+
Ile2
CAT
[ENA]
¡û
>WENV182431245
OIIH01004096
[OIIH] human gut metagenome; human gut
66
141
+
Thr
CGT
[ENA]
¡û
>WENV182431263
OIIH01006271
[OIIH] human gut metagenome; human gut
67
149
+
Leu
CAA
[ENA]
¡û
>WENV182431248
OIIH01004260
[OIIH] human gut metagenome; human gut
74
1
-
Glu
TTC
[ENA]
¡û
>WENV182431240
OIIH01003485
[OIIH] human gut metagenome; human gut
82
155
+
Pro
CGG
[ENA]
¡û
>WENV182431271
OIIH01007703
[OIIH] human gut metagenome; human gut
90
165
+
Ala
GGC
[ENA]
¡û
>WENV182431280
OIIH01010108
[OIIH] human gut metagenome; human gut
93
18
-
Arg
TCT
[ENA]
¡û
>WENV182431265
OIIH01006403
[OIIH] human gut metagenome; human gut
95
170
+
Lys
CTT
[ENA]
¡û
>WENV182431261
OIIH01006032
[OIIH] human gut metagenome; human gut
101
177
+
Asp
GTC
[ENA]
¡û
>WENV182431251
OIIH01004818
[OIIH] human gut metagenome; human gut
137
50
-
Ser
TGA
[ENA]
¡û
>WENV182431278
OIIH01009081
[OIIH] human gut metagenome; human gut
143
57
-
Leu
GAG
[ENA]
¡û
>WENV182431247
OIIH01004260
[OIIH] human gut metagenome; human gut
152
78
-
Asn
GTT
[ENA]
¡û
>WENV182431276
OIIH01008658
[OIIH] human gut metagenome; human gut
167
240
+
Gly
CCC
[ENA]
¡û
>WENV182431228
OIIH01002063
[OIIH] human gut metagenome; human gut
182
269
+
Ser
GCT
[ENA]
¡û
>WENV182431268
OIIH01007268
[OIIH] human gut metagenome; human gut
182
269
+
Ser
TGA
[ENA]
¡û
>WENV182431262
OIIH01006032
[OIIH] human gut metagenome; human gut
186
261
+
Trp
CCA
[ENA]
¡û
>WENV182431281
OIIH01010153
[OIIH] human gut metagenome; human gut
198
104
-
SeC
TCA
[ENA]
¡û
>WENV182431267
OIIH01007242
[OIIH] human gut metagenome; human gut
213
142
-
Glu
TTC
[ENA]
¡û
>WENV182431270
OIIH01007637
[OIIH] human gut metagenome; human gut
238
325
+
Ser
GGA
[ENA]
¡û
>WENV182431254
OIIH01005413
[OIIH] human gut metagenome; human gut
295
370
+
Asn
GTT
[ENA]
¡û
>WENV182431246
OIIH01004215
[OIIH] human gut metagenome; human gut
306
382
+
Arg
TCT
[ENA]
¡û
>WENV182431198
OIIH01000521
[OIIH] human gut metagenome; human gut
326
254
-
Thr
GGT
[ENA]
¡û
>WENV182431229
OIIH01002063
[OIIH] human gut metagenome; human gut
347
419
+
Glu
CTC
[ENA]
¡û
>WENV182431269
OIIH01007371
[OIIH] human gut metagenome; human gut
352
264
-
Ser
GGA
[ENA]
¡û
>WENV182431244
OIIH01003994
[OIIH] human gut metagenome; human gut
359
431
+
Pro
TGG
[ENA]
¡û
>WENV182431266
OIIH01007242
[OIIH] human gut metagenome; human gut
381
305
-
Met
CAT
[ENA]
¡û
>WENV182431237
OIIH01003290
[OIIH] human gut metagenome; human gut
398
469
+
Gln
TTG
[ENA]
¡û
>WENV182431272
OIIH01007722
[OIIH] human gut metagenome; human gut
414
490
+
fMet
CAT
[ENA]
¡û
>WENV182431277
OIIH01008954
[OIIH] human gut metagenome; human gut
438
363
-
Thr
CGT
[ENA]
¡û
>WENV182431264
OIIH01006306
[OIIH] human gut metagenome; human gut
438
521
+
Leu
TAA
[ENA]
¡û
>WENV182431226
OIIH01001971
[OIIH] human gut metagenome; human gut
485
556
+
Gln
TTG
[ENA]
¡û
>WENV182431274
OIIH01008019
[OIIH] human gut metagenome; human gut
485
561
+
Val
CAC
[ENA]
¡û
>WENV182431243
OIIH01003809
[OIIH] human gut metagenome; human gut
510
439
-
Gln
CTG
[ENA]
¡û
>WENV182431197
OIIH01000521
[OIIH] human gut metagenome; human gut
525
442
-
Tyr
GTA
[ENA]
¡û
>WENV182431260
OIIH01006000
[OIIH] human gut metagenome; human gut
541
467
-
Thr
TGT
[ENA]
¡û
>WENV182431275
OIIH01008132
[OIIH] human gut metagenome; human gut
542
466
-
Trp
CCA
[ENA]
¡û
>WENV182431253
OIIH01005199
[OIIH] human gut metagenome; human gut
563
648
+
Tyr
GTA
[ENA]
¡û
>WENV182431227
OIIH01001990
[OIIH] human gut metagenome; human gut
572
647
+
Pro
GGG
[ENA]
¡û
>WENV182431249
OIIH01004348
[OIIH] human gut metagenome; human gut
581
656
+
Ile
GAT
[ENA]
¡û
>WENV182431224
OIIH01001895
[OIIH] human gut metagenome; human gut
583
657
+
Ala
GGC
[ENA]
¡û
>WENV182431259
OIIH01005811
[OIIH] human gut metagenome; human gut
586
500
-
Leu
TAA
[ENA]
¡û
>WENV182431215
OIIH01001636
[OIIH] human gut metagenome; human gut
598
524
-
Glu
TTC
[ENA]
¡û
>WENV182431241
OIIH01003510
[OIIH] human gut metagenome; human gut
608
535
-
Gln
CTG
[ENA]
¡û
>WENV182431255
OIIH01005749
[OIIH] human gut metagenome; human gut
611
687
+
Met
CAT
[ENA]
¡û
>WENV182431232
OIIH01002367
[OIIH] human gut metagenome; human gut
618
545
-
Trp
CCA
[ENA]
¡û
>WENV182431273
OIIH01007984
[OIIH] human gut metagenome; human gut
642
569
-
Lys
CTT
[ENA]
¡û
>WENV182431239
OIIH01003461
[OIIH] human gut metagenome; human gut
653
726
+
Arg
CCT
[ENA]
¡û
>WENV182431258
OIIH01005811
[OIIH] human gut metagenome; human gut
672
599
-
Cys
GCA
[ENA]
¡û
>WENV182431242
OIIH01003520
[OIIH] human gut metagenome; human gut
699
624
-
Phe
GAA
[ENA]
¡û
>WENV182431256
OIIH01005749
[OIIH] human gut metagenome; human gut
736
810
+
Gln
CTG
[ENA]
¡û
>WENV182431238
OIIH01003416
[OIIH] human gut metagenome; human gut
776
850
+
Cys
GCA
[ENA]
¡û
>WENV182431252
OIIH01005076
[OIIH] human gut metagenome; human gut
797
722
-
Ile2
CAT
[ENA]
¡û
>WENV182431223
OIIH01001848
[OIIH] human gut metagenome; human gut
800
727
-
Phe
GAA
[ENA]
¡û
>WENV182431257
OIIH01005811
[OIIH] human gut metagenome; human gut
801
726
-
Gly
GCC
[ENA]
¡û
>WENV182431192
OIIH01000355
[OIIH] human gut metagenome; human gut
822
897
+
Val
GAC
[ENA]
¡û
>WENV182431233
OIIH01002595
[OIIH] human gut metagenome; human gut
842
757
-
Ser
TGA
[ENA]
¡û
>WENV182431250
OIIH01004348
[OIIH] human gut metagenome; human gut
864
938
+
Ala
TGC
[ENA]
¡û
>WENV182431225
OIIH01001961
[OIIH] human gut metagenome; human gut
884
796
-
Ser
GGA
[ENA]
¡û
>WENV182431189
OIIH01000196
[OIIH] human gut metagenome; human gut
996
912
-
Leu
CAA
[ENA]
¡û
>WENV182431217
OIIH01001799
[OIIH] human gut metagenome; human gut
999
925
-
Asp
GTC
[ENA]
¡û
>WENV182431203
OIIH01000769
[OIIH] human gut metagenome; human gut
1028
955
-
Thr
CGT
[ENA]
¡û
>WENV182431213
OIIH01001242
[OIIH] human gut metagenome; human gut
1057
1142
+
Ser
TGA
[ENA]
¡û
>WENV182431230
OIIH01002088
[OIIH] human gut metagenome; human gut
1158
1084
-
His
GTG
[ENA]
¡û
>WENV182431236
OIIH01003276
[OIIH] human gut metagenome; human gut
1250
1329
+
Leu
CAA
[ENA]
¡û
>WENV182431235
OIIH01003106
[OIIH] human gut metagenome; human gut
1283
1207
-
Asn
GTT
[ENA]
¡û
>WENV182431221
OIIH01001810
[OIIH] human gut metagenome; human gut
1322
1394
+
Arg
CCG
[ENA]
¡û
>WENV182431188
OIIH01000185
[OIIH] human gut metagenome; human gut
1328
1256
-
Arg
CCT
[ENA]
¡û
>WENV182431211
OIIH01001101
[OIIH] human gut metagenome; human gut
1350
1275
-
Thr
GGT
[ENA]
¡û
>WENV182431200
OIIH01000713
[OIIH] human gut metagenome; human gut
1353
1280
-
Lys
TTT
[ENA]
¡û
>WENV182431205
OIIH01000828
[OIIH] human gut metagenome; human gut
1354
1280
-
Ala
TGC
[ENA]
¡û
>WENV182431207
OIIH01000960
[OIIH] human gut metagenome; human gut
1368
1295
-
Thr
CGT
[ENA]
¡û
>WENV182431234
OIIH01003106
[OIIH] human gut metagenome; human gut
1397
1323
-
Glu
CTC
[ENA]
¡û
>WENV182431210
OIIH01001101
[OIIH] human gut metagenome; human gut
1430
1354
-
Asp
GTC
[ENA]
¡û
>WENV182431204
OIIH01000828
[OIIH] human gut metagenome; human gut
1445
1371
-
Ile
GAT
[ENA]
¡û
>WENV182431212
OIIH01001172
[OIIH] human gut metagenome; human gut
1454
1372
-
Leu
TAG
[ENA]
¡û
>WENV182431191
OIIH01000261
[OIIH] human gut metagenome; human gut
1540
1616
+
Arg
ACG
[ENA]
¡û
>WENV182431209
OIIH01001101
[OIIH] human gut metagenome; human gut
1682
1607
-
Trp
CCA
[ENA]
¡û
>WENV182431220
OIIH01001800
[OIIH] human gut metagenome; human gut
1708
1633
-
Thr
GGT
[ENA]
¡û
>WENV182431190
OIIH01000239
[OIIH] human gut metagenome; human gut
1774
1849
+
Glu
TTC
[ENA]
¡û
>WENV182431208
OIIH01001082
[OIIH] human gut metagenome; human gut
1776
1850
+
Gly
TCC
[ENA]
¡û
>WENV182431219
OIIH01001800
[OIIH] human gut metagenome; human gut
1789
1715
-
Gly
TCC
[ENA]
¡û
>WENV182431222
OIIH01001837
[OIIH] human gut metagenome; human gut
1858
1932
+
Met
CAT
[ENA]
¡û
>WENV182431218
OIIH01001800
[OIIH] human gut metagenome; human gut
1868
1793
-
Thr
TGT
[ENA]
¡û
>WENV182431214
OIIH01001333
[OIIH] human gut metagenome; human gut
2139
2214
+
Pro
TGG
[ENA]
¡û
>WENV182431193
OIIH01000436
[OIIH] human gut metagenome; human gut
2502
2575
+
Gly
CCC
[ENA]
¡û
>WENV182431202
OIIH01000767
[OIIH] human gut metagenome; human gut
2599
2526
-
Lys
CTT
[ENA]
¡û
>WENV182431187
OIIH01000171
[OIIH] human gut metagenome; human gut
2624
2548
-
Val
TAC
[ENA]
¡û
>WENV182431196
OIIH01000508
[OIIH] human gut metagenome; human gut
2763
2837
+
Thr
TGT
[ENA]
¡û
>WENV182431206
OIIH01000844
[OIIH] human gut metagenome; human gut
2792
2873
+
Leu
TAG
[ENA]
¡û
>WENV182431195
OIIH01000470
[OIIH] human gut metagenome; human gut
3092
3021
-
Gln
CTG
[ENA]
¡û
>WENV182431201
OIIH01000746
[OIIH] human gut metagenome; human gut
3201
3274
+
fMet
CAT
[ENA]
¡û
>WENV182431199
OIIH01000576
[OIIH] human gut metagenome; human gut
3366
3440
+
Arg
TCT
[ENA]
¡û
>WENV182431186
OIIH01000062
[OIIH] human gut metagenome; human gut
3411
3482
+
Gln
TTG
[ENA]
¡û
>WENV182431194
OIIH01000454
[OIIH] human gut metagenome; human gut
3966
3892
-
Ile2
CAT
[ENA]
¡û
>WENV182431185
OIIH01000058
[OIIH] human gut metagenome; human gut
4898
4824
-
Ile2
CAT
[ENA]
¡û
>WENV182431184
OIIH01000028
[OIIH] human gut metagenome; human gut
6695
6769
+
Thr
TGT
[ENA]
¡û
>WENV182431183
OIIH01000026
[OIIH] human gut metagenome; human gut
7452
7378
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK