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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OIWC] human gut metagenome; faeces
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182509389
OIWC01000015
[OIWC] human gut metagenome; faeces
199
125
-
Ile2
CAT
[ENA]
¡û
>WENV182509395
OIWC01000318
[OIWC] human gut metagenome; faeces
244
315
+
Gln
TTG
[ENA]
¡û
>WENV182509399
OIWC01001459
[OIWC] human gut metagenome; faeces
330
417
+
Ser
GCT
[ENA]
¡û
>WENV182509401
OIWC01001741
[OIWC] human gut metagenome; faeces
332
406
+
Pro
TGG
[ENA]
¡û
>WENV182509400
OIWC01001459
[OIWC] human gut metagenome; faeces
444
516
+
Glu
CTC
[ENA]
¡û
>WENV182509398
OIWC01001164
[OIWC] human gut metagenome; faeces
717
799
+
Leu
CAA
[ENA]
¡û
>WENV182509397
OIWC01000721
[OIWC] human gut metagenome; faeces
987
916
-
Gly
CCC
[ENA]
¡û
>WENV182509396
OIWC01000721
[OIWC] human gut metagenome; faeces
1092
1019
-
Thr
CGT
[ENA]
¡û
>WENV182509391
OIWC01000096
[OIWC] human gut metagenome; faeces
1222
1304
+
Tyr
GTA
[ENA]
¡û
>WENV182509392
OIWC01000096
[OIWC] human gut metagenome; faeces
1409
1481
+
Thr
GGT
[ENA]
¡û
>WENV182509394
OIWC01000131
[OIWC] human gut metagenome; faeces
1456
1382
-
Asp
GTC
[ENA]
¡û
>WENV182509393
OIWC01000096
[OIWC] human gut metagenome; faeces
2829
2902
+
Trp
CCA
[ENA]
¡û
>WENV182509390
OIWC01000077
[OIWC] human gut metagenome; faeces
2974
2902
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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