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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJGQ] seawater metagenome; Sea water
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182578964
OJGQ01000287
[OJGQ] seawater metagenome; Sea water
76
152
+
Ile
GAT
[ENA]
¡û
>WENV182578978
OJGQ01002022
[OJGQ] seawater metagenome; Sea water
237
162
-
Trp
CCA
[ENA]
¡û
>WENV182578976
OJGQ01001538
[OJGQ] seawater metagenome; Sea water
286
211
-
Thr
GGT
[ENA]
¡û
>WENV182578983
OJGQ01003106
[OJGQ] seawater metagenome; Sea water
295
369
+
Gln
TTG
[ENA]
¡û
>WENV182578969
OJGQ01001140
[OJGQ] seawater metagenome; Sea water
297
373
+
Ile
GAT
[ENA]
¡û
>WENV182578968
OJGQ01000710
[OJGQ] seawater metagenome; Sea water
335
410
+
Gln
TTG
[ENA]
¡û
>WENV182578970
OJGQ01001140
[OJGQ] seawater metagenome; Sea water
402
477
+
Ala
TGC
[ENA]
¡û
>WENV182578975
OJGQ01001538
[OJGQ] seawater metagenome; Sea water
404
331
-
Gly
TCC
[ENA]
¡û
>WENV182578980
OJGQ01002577
[OJGQ] seawater metagenome; Sea water
418
343
-
Ala
TGC
[ENA]
¡û
>WENV182578971
OJGQ01001490
[OJGQ] seawater metagenome; Sea water
424
514
+
Ser
GCT
[ENA]
¡û
>WENV182578981
OJGQ01002912
[OJGQ] seawater metagenome; Sea water
439
365
-
Val
GAC
[ENA]
¡û
>WENV182578982
OJGQ01003068
[OJGQ] seawater metagenome; Sea water
461
389
-
Arg
TCT
[ENA]
¡û
>WENV182578979
OJGQ01002577
[OJGQ] seawater metagenome; Sea water
512
436
-
Ile
GAT
[ENA]
¡û
>WENV182578977
OJGQ01001576
[OJGQ] seawater metagenome; Sea water
546
621
+
Val
TAC
[ENA]
¡û
>WENV182578974
OJGQ01001538
[OJGQ] seawater metagenome; Sea water
566
483
-
Tyr
GTA
[ENA]
¡û
>WENV182578972
OJGQ01001490
[OJGQ] seawater metagenome; Sea water
566
642
+
Arg
ACG
[ENA]
¡û
>WENV182578973
OJGQ01001490
[OJGQ] seawater metagenome; Sea water
669
745
+
Arg
GCG
[ENA]
¡û
>WENV182578965
OJGQ01000390
[OJGQ] seawater metagenome; Sea water
842
758
-
Ala
AGC
[ENA]
¡û
>WENV182578967
OJGQ01000558
[OJGQ] seawater metagenome; Sea water
929
854
-
Ala
TGC
[ENA]
¡û
>WENV182578966
OJGQ01000558
[OJGQ] seawater metagenome; Sea water
1036
960
-
Ile
GAT
[ENA]
¡û
>WENV182578963
OJGQ01000120
[OJGQ] seawater metagenome; Sea water
1887
1962
+
Trp
CCA
[ENA]
¡û
>WENV182578962
OJGQ01000052
[OJGQ] seawater metagenome; Sea water
2597
2521
-
fMet
CAT
[ENA]
¡û
>WENV182578960
OJGQ01000026
[OJGQ] seawater metagenome; Sea water
2862
2937
+
Trp
CCA
[ENA]
¡û
>WENV182578961
OJGQ01000052
[OJGQ] seawater metagenome; Sea water
2892
2807
-
Leu
GAG
[ENA]
¡û
>WENV182578959
OJGQ01000008
[OJGQ] seawater metagenome; Sea water
7511
7586
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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