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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJTG] human gut metagenome; human gut
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182798274
OJTG01000309
[OJTG] human gut metagenome; human gut
68
162
+
SeC
TCA
[ENA]
¡û
>WENV182798310
OJTG01005252
[OJTG] human gut metagenome; human gut
118
205
+
Ser
TGA
[ENA]
¡û
>WENV182798300
OJTG01002063
[OJTG] human gut metagenome; human gut
152
68
-
Tyr
GTA
[ENA]
¡û
>WENV182798303
OJTG01002468
[OJTG] human gut metagenome; human gut
152
237
+
Ser
TGA
[ENA]
¡û
>WENV182798309
OJTG01005011
[OJTG] human gut metagenome; human gut
171
255
+
Leu
CAA
[ENA]
¡û
>WENV182798308
OJTG01004359
[OJTG] human gut metagenome; human gut
182
255
+
Gly
CCC
[ENA]
¡û
>WENV182798287
OJTG01000977
[OJTG] human gut metagenome; human gut
259
333
+
Thr
TGT
[ENA]
¡û
>WENV182798277
OJTG01000370
[OJTG] human gut metagenome; human gut
271
346
+
Ile2
CAT
[ENA]
¡û
>WENV182798311
OJTG01005626
[OJTG] human gut metagenome; human gut
306
233
-
Gly
CCC
[ENA]
¡û
>WENV182798293
OJTG01001482
[OJTG] human gut metagenome; human gut
323
397
+
Arg
CCT
[ENA]
¡û
>WENV182798305
OJTG01003652
[OJTG] human gut metagenome; human gut
403
476
+
Phe
GAA
[ENA]
¡û
>WENV182798288
OJTG01000977
[OJTG] human gut metagenome; human gut
407
490
+
Tyr
GTA
[ENA]
¡û
>WENV182798291
OJTG01001233
[OJTG] human gut metagenome; human gut
432
505
+
fMet
CAT
[ENA]
¡û
>WENV182798298
OJTG01001949
[OJTG] human gut metagenome; human gut
438
363
-
Trp
CCA
[ENA]
¡û
>WENV182798296
OJTG01001845
[OJTG] human gut metagenome; human gut
442
367
-
Asn
GTT
[ENA]
¡û
>WENV182798284
OJTG01000885
[OJTG] human gut metagenome; human gut
448
375
-
Trp
CCA
[ENA]
¡û
>WENV182798306
OJTG01003704
[OJTG] human gut metagenome; human gut
476
552
+
Val
GAC
[ENA]
¡û
>WENV182798297
OJTG01001949
[OJTG] human gut metagenome; human gut
523
447
-
Asp
GTC
[ENA]
¡û
>WENV182798302
OJTG01002185
[OJTG] human gut metagenome; human gut
568
494
-
Gly
TCC
[ENA]
¡û
>WENV182798301
OJTG01002185
[OJTG] human gut metagenome; human gut
647
572
-
Thr
TGT
[ENA]
¡û
>WENV182798307
OJTG01004029
[OJTG] human gut metagenome; human gut
656
731
+
Ile2
CAT
[ENA]
¡û
>WENV182798282
OJTG01000590
[OJTG] human gut metagenome; human gut
698
772
+
Ile2
CAT
[ENA]
¡û
>WENV182798285
OJTG01000955
[OJTG] human gut metagenome; human gut
776
851
+
Val
TAC
[ENA]
¡û
>WENV182798294
OJTG01001770
[OJTG] human gut metagenome; human gut
843
918
+
Thr
CGT
[ENA]
¡û
>WENV182798286
OJTG01000955
[OJTG] human gut metagenome; human gut
855
930
+
Lys
TTT
[ENA]
¡û
>WENV182798278
OJTG01000429
[OJTG] human gut metagenome; human gut
863
787
-
Pro
CGG
[ENA]
¡û
>WENV182798304
OJTG01002488
[OJTG] human gut metagenome; human gut
931
1005
+
His
GTG
[ENA]
¡û
>WENV182798290
OJTG01001102
[OJTG] human gut metagenome; human gut
1018
942
-
Arg
TCT
[ENA]
¡û
>WENV182798299
OJTG01001992
[OJTG] human gut metagenome; human gut
1124
1049
-
Val
TAC
[ENA]
¡û
>WENV182798292
OJTG01001338
[OJTG] human gut metagenome; human gut
1191
1266
+
Ala
GGC
[ENA]
¡û
>WENV182798295
OJTG01001771
[OJTG] human gut metagenome; human gut
1211
1286
+
Asn
GTT
[ENA]
¡û
>WENV182798281
OJTG01000519
[OJTG] human gut metagenome; human gut
1522
1447
-
Phe
GAA
[ENA]
¡û
>WENV182798276
OJTG01000351
[OJTG] human gut metagenome; human gut
1642
1567
-
Gly
GCC
[ENA]
¡û
>WENV182798289
OJTG01000989
[OJTG] human gut metagenome; human gut
1760
1688
-
Glu
CTC
[ENA]
¡û
>WENV182798283
OJTG01000885
[OJTG] human gut metagenome; human gut
1808
1736
-
Thr
GGT
[ENA]
¡û
>WENV182798270
OJTG01000116
[OJTG] human gut metagenome; human gut
1979
2054
+
Glu
TTC
[ENA]
¡û
>WENV182798271
OJTG01000226
[OJTG] human gut metagenome; human gut
2053
2129
+
Arg
TCT
[ENA]
¡û
>WENV182798275
OJTG01000343
[OJTG] human gut metagenome; human gut
2112
2188
+
fMet
CAT
[ENA]
¡û
>WENV182798279
OJTG01000437
[OJTG] human gut metagenome; human gut
2245
2321
+
Arg
CCG
[ENA]
¡û
>WENV182798280
OJTG01000437
[OJTG] human gut metagenome; human gut
2380
2455
+
His
GTG
[ENA]
¡û
>WENV182798273
OJTG01000286
[OJTG] human gut metagenome; human gut
2851
2775
-
Pro
TGG
[ENA]
¡û
>WENV182798272
OJTG01000286
[OJTG] human gut metagenome; human gut
2980
2894
-
Leu
CAG
[ENA]
¡û
>WENV182798269
OJTG01000022
[OJTG] human gut metagenome; human gut
4145
4071
-
Ala
TGC
[ENA]
¡û
>WENV182798268
OJTG01000022
[OJTG] human gut metagenome; human gut
4250
4174
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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