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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJZC] human gut metagenome; human gut
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182816647
OJZC01001183
[OJZC] human gut metagenome; human gut
7
80
+
fMet
CAT
[ENA]
¡û
>WENV182816625
OJZC01000034
[OJZC] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¡û
>WENV182816640
OJZC01001014
[OJZC] human gut metagenome; human gut
63
138
+
Val
TAC
[ENA]
¡û
>WENV182816648
OJZC01001183
[OJZC] human gut metagenome; human gut
95
170
+
Asp
GTC
[ENA]
¡û
>WENV182816614
OJZC01000029
[OJZC] human gut metagenome; human gut
96
186
+
Ser
GGA
[ENA]
¡û
>WENV182816633
OJZC01000805
[OJZC] human gut metagenome; human gut
106
177
+
Arg
CCG
[ENA]
¡û
>WENV182816639
OJZC01000890
[OJZC] human gut metagenome; human gut
132
56
-
Asp
GTC
[ENA]
¡û
>WENV182816641
OJZC01001014
[OJZC] human gut metagenome; human gut
145
220
+
Thr
TGT
[ENA]
¡û
>WENV182816626
OJZC01000034
[OJZC] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¡û
>WENV182816632
OJZC01000048
[OJZC] human gut metagenome; human gut
153
61
-
Ser
TGA
[ENA]
¡û
>WENV182816649
OJZC01001183
[OJZC] human gut metagenome; human gut
180
254
+
Phe
GAA
[ENA]
¡û
>WENV182816615
OJZC01000029
[OJZC] human gut metagenome; human gut
202
275
+
Glu
TTC
[ENA]
¡û
>WENV182816642
OJZC01001014
[OJZC] human gut metagenome; human gut
226
300
+
Lys
TTT
[ENA]
¡û
>WENV182816627
OJZC01000034
[OJZC] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¡û
>WENV182816638
OJZC01000890
[OJZC] human gut metagenome; human gut
245
170
-
fMet
CAT
[ENA]
¡û
>WENV182816650
OJZC01001183
[OJZC] human gut metagenome; human gut
267
342
+
His
GTG
[ENA]
¡û
>WENV182816616
OJZC01000029
[OJZC] human gut metagenome; human gut
301
375
+
Val
TAC
[ENA]
¡û
>WENV182816628
OJZC01000034
[OJZC] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¡û
>WENV182816643
OJZC01001014
[OJZC] human gut metagenome; human gut
318
392
+
Gly
GCC
[ENA]
¡û
>WENV182816651
OJZC01001183
[OJZC] human gut metagenome; human gut
360
433
+
Gly
TCC
[ENA]
¡û
>WENV182816637
OJZC01000890
[OJZC] human gut metagenome; human gut
367
278
-
Ser
TGA
[ENA]
¡û
>WENV182816617
OJZC01000029
[OJZC] human gut metagenome; human gut
385
460
+
Asp
GTC
[ENA]
¡û
>WENV182816629
OJZC01000034
[OJZC] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¡û
>WENV182816644
OJZC01001014
[OJZC] human gut metagenome; human gut
404
492
+
Leu
TAA
[ENA]
¡û
>WENV182816652
OJZC01001183
[OJZC] human gut metagenome; human gut
443
517
+
Asn
GTT
[ENA]
¡û
>WENV182816636
OJZC01000890
[OJZC] human gut metagenome; human gut
475
400
-
Ile2
CAT
[ENA]
¡û
>WENV182816630
OJZC01000034
[OJZC] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¡û
>WENV182816645
OJZC01001014
[OJZC] human gut metagenome; human gut
505
579
+
Arg
ACG
[ENA]
¡û
>WENV182816618
OJZC01000029
[OJZC] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¡û
>WENV182816635
OJZC01000890
[OJZC] human gut metagenome; human gut
569
494
-
Met
CAT
[ENA]
¡û
>WENV182816619
OJZC01000029
[OJZC] human gut metagenome; human gut
583
665
+
Tyr
GTA
[ENA]
¡û
>WENV182816646
OJZC01001014
[OJZC] human gut metagenome; human gut
588
661
+
Pro
TGG
[ENA]
¡û
>WENV182816612
OJZC01000017
[OJZC] human gut metagenome; human gut
603
678
+
Asn
GTT
[ENA]
¡û
>WENV182816634
OJZC01000890
[OJZC] human gut metagenome; human gut
664
590
-
Ala
TGC
[ENA]
¡û
>WENV182816631
OJZC01000034
[OJZC] human gut metagenome; human gut
667
740
+
Pro
TGG
[ENA]
¡û
>WENV182816620
OJZC01000029
[OJZC] human gut metagenome; human gut
669
742
+
Trp
CCA
[ENA]
¡û
>WENV182816621
OJZC01000029
[OJZC] human gut metagenome; human gut
779
852
+
His
GTG
[ENA]
¡û
>WENV182816622
OJZC01000029
[OJZC] human gut metagenome; human gut
865
938
+
Gln
TTG
[ENA]
¡û
>WENV182816623
OJZC01000029
[OJZC] human gut metagenome; human gut
963
1033
+
Cys
GCA
[ENA]
¡û
>WENV182816624
OJZC01000029
[OJZC] human gut metagenome; human gut
1046
1131
+
Leu
CAA
[ENA]
¡û
>WENV182816609
OJZC01000008
[OJZC] human gut metagenome; human gut
1468
1394
-
Lys
CTT
[ENA]
¡û
>WENV182816605
OJZC01000004
[OJZC] human gut metagenome; human gut
25084
25157
+
Arg
CCG
[ENA]
¡û
>WENV182816611
OJZC01000011
[OJZC] human gut metagenome; human gut
31259
31188
-
Trp
CCA
[ENA]
¡û
>WENV182816613
OJZC01000017
[OJZC] human gut metagenome; human gut
34838
34927
+
Ser
CGA
[ENA]
¡û
>WENV182816606
OJZC01000006
[OJZC] human gut metagenome; human gut
57799
57885
+
Leu
GAG
[ENA]
¡û
>WENV182816607
OJZC01000006
[OJZC] human gut metagenome; human gut
69130
69212
+
Tyr
GTA
[ENA]
¡û
>WENV182816608
OJZC01000006
[OJZC] human gut metagenome; human gut
69220
69293
+
Gln
TTG
[ENA]
¡û
>WENV182816610
OJZC01000011
[OJZC] human gut metagenome; human gut
85259
85331
+
Thr
GGT
[ENA]
¡û
>WENV182816604
OJZC01000003
[OJZC] human gut metagenome; human gut
132120
132045
-
Arg
TCT
[ENA]
¡û
>WENV182816602
OJZC01000002
[OJZC] human gut metagenome; human gut
132534
132606
+
Thr
CGT
[ENA]
¡û
>WENV182816603
OJZC01000003
[OJZC] human gut metagenome; human gut
181459
181534
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK