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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKGU] human gut metagenome; human gut
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182838689
OKGU01002617
[OKGU] human gut metagenome; human gut
95
182
+
Ser
TGA
[ENA]
¡û
>WENV182838673
OKGU01000639
[OKGU] human gut metagenome; human gut
121
37
-
Tyr
GTA
[ENA]
¡û
>WENV182838672
OKGU01000639
[OKGU] human gut metagenome; human gut
207
132
-
Thr
TGT
[ENA]
¡û
>WENV182838680
OKGU01001616
[OKGU] human gut metagenome; human gut
208
283
+
Thr
CGT
[ENA]
¡û
>WENV182838667
OKGU01000352
[OKGU] human gut metagenome; human gut
341
265
-
Pro
GGG
[ENA]
¡û
>WENV182838681
OKGU01001918
[OKGU] human gut metagenome; human gut
400
324
-
Arg
TCT
[ENA]
¡û
>WENV182838688
OKGU01002414
[OKGU] human gut metagenome; human gut
456
382
-
Gln
CTG
[ENA]
¡û
>WENV182838685
OKGU01002397
[OKGU] human gut metagenome; human gut
466
393
-
Gly
CCC
[ENA]
¡û
>WENV182838687
OKGU01002414
[OKGU] human gut metagenome; human gut
580
504
-
Met
CAT
[ENA]
¡û
>WENV182838690
OKGU01002842
[OKGU] human gut metagenome; human gut
583
509
-
Arg
CCT
[ENA]
¡û
>WENV182838682
OKGU01002026
[OKGU] human gut metagenome; human gut
619
706
+
Ser
GGA
[ENA]
¡û
>WENV182838684
OKGU01002287
[OKGU] human gut metagenome; human gut
621
696
+
Gly
GCC
[ENA]
¡û
>WENV182838686
OKGU01002414
[OKGU] human gut metagenome; human gut
678
604
-
Gln
TTG
[ENA]
¡û
>WENV182838677
OKGU01001156
[OKGU] human gut metagenome; human gut
697
608
-
Ser
CGA
[ENA]
¡û
>WENV182838676
OKGU01000869
[OKGU] human gut metagenome; human gut
743
657
-
Leu
GAG
[ENA]
¡û
>WENV182838669
OKGU01000423
[OKGU] human gut metagenome; human gut
786
711
-
Ile2
CAT
[ENA]
¡û
>WENV182838683
OKGU01002113
[OKGU] human gut metagenome; human gut
835
749
-
Leu
TAA
[ENA]
¡û
>WENV182838661
OKGU01000024
[OKGU] human gut metagenome; human gut
898
823
-
Lys
TTT
[ENA]
¡û
>WENV182838660
OKGU01000024
[OKGU] human gut metagenome; human gut
978
903
-
Val
TAC
[ENA]
¡û
>WENV182838679
OKGU01001614
[OKGU] human gut metagenome; human gut
1026
950
-
Pro
TGG
[ENA]
¡û
>WENV182838678
OKGU01001318
[OKGU] human gut metagenome; human gut
1187
1112
-
Trp
CCA
[ENA]
¡û
>WENV182838670
OKGU01000454
[OKGU] human gut metagenome; human gut
1215
1291
+
fMet
CAT
[ENA]
¡û
>WENV182838674
OKGU01000825
[OKGU] human gut metagenome; human gut
1438
1530
+
Ser
GCT
[ENA]
¡û
>WENV182838665
OKGU01000135
[OKGU] human gut metagenome; human gut
1493
1568
+
Phe
GAA
[ENA]
¡û
>WENV182838668
OKGU01000406
[OKGU] human gut metagenome; human gut
1515
1591
+
fMet
CAT
[ENA]
¡û
>WENV182838675
OKGU01000825
[OKGU] human gut metagenome; human gut
1535
1611
+
Arg
ACG
[ENA]
¡û
>WENV182838671
OKGU01000489
[OKGU] human gut metagenome; human gut
1581
1656
+
Glu
TTC
[ENA]
¡û
>WENV182838662
OKGU01000071
[OKGU] human gut metagenome; human gut
1774
1850
+
Arg
CCG
[ENA]
¡û
>WENV182838663
OKGU01000071
[OKGU] human gut metagenome; human gut
1906
1981
+
His
GTG
[ENA]
¡û
>WENV182838664
OKGU01000071
[OKGU] human gut metagenome; human gut
2005
2091
+
Leu
CAG
[ENA]
¡û
>WENV182838658
OKGU01000005
[OKGU] human gut metagenome; human gut
2887
2811
-
Asp
GTC
[ENA]
¡û
>WENV182838666
OKGU01000167
[OKGU] human gut metagenome; human gut
3106
3182
+
Pro
CGG
[ENA]
¡û
>WENV182838659
OKGU01000024
[OKGU] human gut metagenome; human gut
3680
3755
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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