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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKKZ] human gut metagenome; human gut
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182850327
OKKZ01003024
[OKKZ] human gut metagenome; human gut
59
133
+
Gln
CTG
[ENA]
¡û
>WENV182850317
OKKZ01002290
[OKKZ] human gut metagenome; human gut
78
3
-
Gly
GCC
[ENA]
¡û
>WENV182850330
OKKZ01003731
[OKKZ] human gut metagenome; human gut
83
8
-
Asn
GTT
[ENA]
¡û
>WENV182850321
OKKZ01002438
[OKKZ] human gut metagenome; human gut
106
181
+
Trp
CCA
[ENA]
¡û
>WENV182850334
OKKZ01004114
[OKKZ] human gut metagenome; human gut
129
205
+
Ile
GAT
[ENA]
¡û
>WENV182850302
OKKZ01000685
[OKKZ] human gut metagenome; human gut
132
59
-
Cys
GCA
[ENA]
¡û
>WENV182850290
OKKZ01000329
[OKKZ] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¡û
>WENV182850292
OKKZ01000435
[OKKZ] human gut metagenome; human gut
175
103
-
Arg
CCT
[ENA]
¡û
>WENV182850322
OKKZ01002523
[OKKZ] human gut metagenome; human gut
183
108
-
Gly
GCC
[ENA]
¡û
>WENV182850326
OKKZ01003008
[OKKZ] human gut metagenome; human gut
197
111
-
Leu
GAG
[ENA]
¡û
>WENV182850314
OKKZ01001779
[OKKZ] human gut metagenome; human gut
214
128
-
Leu
CAG
[ENA]
¡û
>WENV182850335
OKKZ01004114
[OKKZ] human gut metagenome; human gut
244
319
+
Ala
TGC
[ENA]
¡û
>WENV182850301
OKKZ01000685
[OKKZ] human gut metagenome; human gut
248
173
-
Gly
GCC
[ENA]
¡û
>WENV182850336
OKKZ01004439
[OKKZ] human gut metagenome; human gut
322
411
+
Ser
GGA
[ENA]
¡û
>WENV182850313
OKKZ01001779
[OKKZ] human gut metagenome; human gut
331
256
-
His
GTG
[ENA]
¡û
>WENV182850319
OKKZ01002391
[OKKZ] human gut metagenome; human gut
350
266
-
Tyr
GTA
[ENA]
¡û
>WENV182850333
OKKZ01003899
[OKKZ] human gut metagenome; human gut
429
353
-
Val
GAC
[ENA]
¡û
>WENV182850312
OKKZ01001779
[OKKZ] human gut metagenome; human gut
471
395
-
Arg
CCG
[ENA]
¡û
>WENV182850332
OKKZ01003899
[OKKZ] human gut metagenome; human gut
510
434
-
Val
GAC
[ENA]
¡û
>WENV182850331
OKKZ01003749
[OKKZ] human gut metagenome; human gut
513
437
-
Arg
ACG
[ENA]
¡û
>WENV182850325
OKKZ01002797
[OKKZ] human gut metagenome; human gut
748
672
-
Arg
TCT
[ENA]
¡û
>WENV182850324
OKKZ01002797
[OKKZ] human gut metagenome; human gut
831
754
-
Ile2
CAT
[ENA]
¡û
>WENV182850315
OKKZ01002128
[OKKZ] human gut metagenome; human gut
875
788
-
Ser
TGA
[ENA]
¡û
>WENV182850329
OKKZ01003449
[OKKZ] human gut metagenome; human gut
913
828
-
Leu
TAA
[ENA]
¡û
>WENV182850318
OKKZ01002366
[OKKZ] human gut metagenome; human gut
937
862
-
Thr
CGT
[ENA]
¡û
>WENV182850310
OKKZ01001440
[OKKZ] human gut metagenome; human gut
1031
1120
+
Ser
CGA
[ENA]
¡û
>WENV182850328
OKKZ01003036
[OKKZ] human gut metagenome; human gut
1035
1124
+
Ser
CGA
[ENA]
¡û
>WENV182850303
OKKZ01000720
[OKKZ] human gut metagenome; human gut
1063
988
-
Ala
GGC
[ENA]
¡û
>WENV182850305
OKKZ01000910
[OKKZ] human gut metagenome; human gut
1085
991
-
SeC
TCA
[ENA]
¡û
>WENV182850323
OKKZ01002666
[OKKZ] human gut metagenome; human gut
1162
1086
-
Arg
TCT
[ENA]
¡û
>WENV182850311
OKKZ01001574
[OKKZ] human gut metagenome; human gut
1297
1373
+
fMet
CAT
[ENA]
¡û
>WENV182850308
OKKZ01001043
[OKKZ] human gut metagenome; human gut
1385
1461
+
Pro
GGG
[ENA]
¡û
>WENV182850320
OKKZ01002404
[OKKZ] human gut metagenome; human gut
1433
1509
+
Met
CAT
[ENA]
¡û
>WENV182850316
OKKZ01002177
[OKKZ] human gut metagenome; human gut
1727
1652
-
Lys
TTT
[ENA]
¡û
>WENV182850300
OKKZ01000656
[OKKZ] human gut metagenome; human gut
1885
1801
-
Tyr
GTA
[ENA]
¡û
>WENV182850299
OKKZ01000656
[OKKZ] human gut metagenome; human gut
2160
2076
-
Tyr
GTA
[ENA]
¡û
>WENV182850279
OKKZ01000010
[OKKZ] human gut metagenome; human gut
2260
2336
+
Pro
GGG
[ENA]
¡û
>WENV182850288
OKKZ01000238
[OKKZ] human gut metagenome; human gut
2498
2412
-
Leu
CAG
[ENA]
¡û
>WENV182850307
OKKZ01001022
[OKKZ] human gut metagenome; human gut
2514
2587
+
Gly
CCC
[ENA]
¡û
>WENV182850309
OKKZ01001316
[OKKZ] human gut metagenome; human gut
2538
2632
+
SeC
TCA
[ENA]
¡û
>WENV182850304
OKKZ01000826
[OKKZ] human gut metagenome; human gut
2725
2809
+
Leu
CAA
[ENA]
¡û
>WENV182850295
OKKZ01000534
[OKKZ] human gut metagenome; human gut
2832
2919
+
Ser
GGA
[ENA]
¡û
>WENV182850294
OKKZ01000461
[OKKZ] human gut metagenome; human gut
2962
2887
-
Lys
CTT
[ENA]
¡û
>WENV182850293
OKKZ01000455
[OKKZ] human gut metagenome; human gut
3014
3087
+
Gly
CCC
[ENA]
¡û
>WENV182850306
OKKZ01000995
[OKKZ] human gut metagenome; human gut
3025
3101
+
Arg
TCT
[ENA]
¡û
>WENV182850289
OKKZ01000267
[OKKZ] human gut metagenome; human gut
3061
2986
-
Ile2
CAT
[ENA]
¡û
>WENV182850296
OKKZ01000589
[OKKZ] human gut metagenome; human gut
3858
3933
+
Thr
TGT
[ENA]
¡û
>WENV182850297
OKKZ01000589
[OKKZ] human gut metagenome; human gut
3944
4028
+
Tyr
GTA
[ENA]
¡û
>WENV182850298
OKKZ01000589
[OKKZ] human gut metagenome; human gut
4144
4218
+
Gly
TCC
[ENA]
¡û
>WENV182850291
OKKZ01000409
[OKKZ] human gut metagenome; human gut
4887
4974
+
Ser
TGA
[ENA]
¡û
>WENV182850283
OKKZ01000136
[OKKZ] human gut metagenome; human gut
5736
5812
+
Pro
CGG
[ENA]
¡û
>WENV182850282
OKKZ01000123
[OKKZ] human gut metagenome; human gut
5952
6028
+
Pro
TGG
[ENA]
¡û
>WENV182850287
OKKZ01000190
[OKKZ] human gut metagenome; human gut
6074
6160
+
Leu
CAG
[ENA]
¡û
>WENV182850286
OKKZ01000172
[OKKZ] human gut metagenome; human gut
6411
6335
-
Arg
ACG
[ENA]
¡û
>WENV182850284
OKKZ01000161
[OKKZ] human gut metagenome; human gut
6581
6506
-
Ala
GGC
[ENA]
¡û
>WENV182850285
OKKZ01000172
[OKKZ] human gut metagenome; human gut
6676
6600
-
Arg
ACG
[ENA]
¡û
>WENV182850280
OKKZ01000010
[OKKZ] human gut metagenome; human gut
10326
10251
-
Thr
TGT
[ENA]
¡û
>WENV182850281
OKKZ01000017
[OKKZ] human gut metagenome; human gut
12367
12442
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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