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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLIG] metagenome; surface
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183063509
OLIG01000976
[OLIG] metagenome; surface
82
6
-
Met
CAT
[ENA]
¡û
>WENV183063489
OLIG01000222
[OLIG] metagenome; surface
83
157
+
Ala
TGC
[ENA]
¡û
>WENV183063488
OLIG01000208
[OLIG] metagenome; surface
108
183
+
His
GTG
[ENA]
¡û
>WENV183063502
OLIG01000579
[OLIG] metagenome; surface
124
51
-
Thr
TGT
[ENA]
¡û
>WENV183063514
OLIG01001950
[OLIG] metagenome; surface
126
41
-
Ser
TGA
[ENA]
¡û
>WENV183063510
OLIG01001281
[OLIG] metagenome; surface
156
229
+
Ile
GAT
[ENA]
¡û
>WENV183063506
OLIG01000749
[OLIG] metagenome; surface
159
71
-
Ser
GGA
[ENA]
¡û
>WENV183063508
OLIG01000976
[OLIG] metagenome; surface
178
102
-
fMet
CAT
[ENA]
¡û
>WENV183063444
OLIG01000026
[OLIG] metagenome; surface
221
296
+
Thr
TGT
[ENA]
¡û
>WENV183063490
OLIG01000222
[OLIG] metagenome; surface
249
331
+
Tyr
GTA
[ENA]
¡û
>WENV183063511
OLIG01001281
[OLIG] metagenome; surface
259
332
+
Lys
TTT
[ENA]
¡û
>WENV183063507
OLIG01000976
[OLIG] metagenome; surface
275
201
-
Asn
GTT
[ENA]
¡û
>WENV183063499
OLIG01000482
[OLIG] metagenome; surface
331
405
+
Ile2
CAT
[ENA]
¡û
>WENV183063491
OLIG01000222
[OLIG] metagenome; surface
372
456
+
Ser
TGA
[ENA]
¡û
>WENV183063484
OLIG01000144
[OLIG] metagenome; surface
373
446
+
Gly
GCC
[ENA]
¡û
>WENV183063497
OLIG01000432
[OLIG] metagenome; surface
433
521
+
Ser
CGA
[ENA]
¡û
>WENV183063454
OLIG01000051
[OLIG] metagenome; surface
443
522
+
Gln
TTG
[ENA]
¡û
>WENV183063513
OLIG01001345
[OLIG] metagenome; surface
447
353
-
SeC
TCA
[ENA]
¡û
>WENV183063482
OLIG01000141
[OLIG] metagenome; surface
456
546
+
Ser
GCT
[ENA]
¡û
>WENV183063485
OLIG01000144
[OLIG] metagenome; surface
474
545
+
Cys
GCA
[ENA]
¡û
>WENV183063512
OLIG01001333
[OLIG] metagenome; surface
512
440
-
Gln
TTG
[ENA]
¡û
>WENV183063501
OLIG01000546
[OLIG] metagenome; surface
516
590
+
Asn
GTT
[ENA]
¡û
>WENV183063486
OLIG01000144
[OLIG] metagenome; surface
546
618
+
Val
GAC
[ENA]
¡û
>WENV183063498
OLIG01000463
[OLIG] metagenome; surface
552
482
-
Met
CAT
[ENA]
¡û
>WENV183063480
OLIG01000112
[OLIG] metagenome; surface
623
551
-
Asp
GTC
[ENA]
¡û
>WENV183063505
OLIG01000700
[OLIG] metagenome; surface
643
570
-
Phe
GAA
[ENA]
¡û
>WENV183063479
OLIG01000112
[OLIG] metagenome; surface
703
629
-
Glu
TTC
[ENA]
¡û
>WENV183063504
OLIG01000700
[OLIG] metagenome; surface
736
662
-
Asp
GTC
[ENA]
¡û
>WENV183063483
OLIG01000141
[OLIG] metagenome; surface
776
849
+
Arg
ACG
[ENA]
¡û
>WENV183063478
OLIG01000112
[OLIG] metagenome; surface
779
705
-
Asn
GTT
[ENA]
¡û
>WENV183063496
OLIG01000308
[OLIG] metagenome; surface
791
718
-
Trp
CCA
[ENA]
¡û
>WENV183063503
OLIG01000700
[OLIG] metagenome; surface
847
772
-
Glu
TTC
[ENA]
¡û
>WENV183063432
OLIG01000002
[OLIG] metagenome; surface
902
977
+
Thr
CGT
[ENA]
¡û
>WENV183063500
OLIG01000501
[OLIG] metagenome; surface
916
991
+
Lys
CTT
[ENA]
¡û
>WENV183063495
OLIG01000308
[OLIG] metagenome; surface
1003
930
-
Met
CAT
[ENA]
¡û
>WENV183063465
OLIG01000071
[OLIG] metagenome; surface
1073
1000
-
Trp
CCA
[ENA]
¡û
>WENV183063494
OLIG01000308
[OLIG] metagenome; surface
1117
1042
-
Thr
GGT
[ENA]
¡û
>WENV183063492
OLIG01000246
[OLIG] metagenome; surface
1354
1438
+
Leu
TAG
[ENA]
¡û
>WENV183063458
OLIG01000052
[OLIG] metagenome; surface
1380
1305
-
Phe
GAA
[ENA]
¡û
>WENV183063469
OLIG01000081
[OLIG] metagenome; surface
1433
1348
-
Ser
GGA
[ENA]
¡û
>WENV183063457
OLIG01000052
[OLIG] metagenome; surface
1515
1441
-
Asp
GTC
[ENA]
¡û
>WENV183063493
OLIG01000246
[OLIG] metagenome; surface
1533
1608
+
Arg
TCG
[ENA]
¡û
>WENV183063445
OLIG01000028
[OLIG] metagenome; surface
1938
2011
+
Gly
CCC
[ENA]
¡û
>WENV183063456
OLIG01000052
[OLIG] metagenome; surface
2001
1927
-
Glu
TTC
[ENA]
¡û
>WENV183063487
OLIG01000161
[OLIG] metagenome; surface
2868
2945
+
Leu
TAA
[ENA]
¡û
>WENV183063470
OLIG01000102
[OLIG] metagenome; surface
3380
3454
+
Val
TAC
[ENA]
¡û
>WENV183063481
OLIG01000134
[OLIG] metagenome; surface
3527
3453
-
Leu
TAA
[ENA]
¡û
>WENV183063455
OLIG01000052
[OLIG] metagenome; surface
3814
3888
+
Lys
TTT
[ENA]
¡û
>WENV183063467
OLIG01000080
[OLIG] metagenome; surface
4165
4239
+
Lys
CTT
[ENA]
¡û
>WENV183063464
OLIG01000071
[OLIG] metagenome; surface
5139
5065
-
Met
CAT
[ENA]
¡û
>WENV183063450
OLIG01000045
[OLIG] metagenome; surface
5217
5144
-
Asn
GTT
[ENA]
¡û
>WENV183063463
OLIG01000071
[OLIG] metagenome; surface
5277
5204
-
Thr
GGT
[ENA]
¡û
>WENV183063462
OLIG01000071
[OLIG] metagenome; surface
5560
5478
-
Tyr
GTA
[ENA]
¡û
>WENV183063477
OLIG01000112
[OLIG] metagenome; surface
5909
5834
-
Ala
TGC
[ENA]
¡û
>WENV183063461
OLIG01000064
[OLIG] metagenome; surface
5975
5900
-
Glu
CTC
[ENA]
¡û
>WENV183063476
OLIG01000112
[OLIG] metagenome; surface
5999
5926
-
Pro
TGG
[ENA]
¡û
>WENV183063475
OLIG01000112
[OLIG] metagenome; surface
6082
6008
-
Arg
ACG
[ENA]
¡û
>WENV183063474
OLIG01000112
[OLIG] metagenome; surface
6183
6095
-
Leu
TAA
[ENA]
¡û
>WENV183063460
OLIG01000064
[OLIG] metagenome; surface
6183
6111
-
Gln
CTG
[ENA]
¡û
>WENV183063473
OLIG01000112
[OLIG] metagenome; surface
6262
6191
-
Gly
GCC
[ENA]
¡û
>WENV183063472
OLIG01000112
[OLIG] metagenome; surface
6354
6280
-
Lys
TTT
[ENA]
¡û
>WENV183063471
OLIG01000112
[OLIG] metagenome; surface
6435
6360
-
Thr
TGT
[ENA]
¡û
>WENV183063451
OLIG01000048
[OLIG] metagenome; surface
7143
7217
+
Ile2
CAT
[ENA]
¡û
>WENV183063466
OLIG01000078
[OLIG] metagenome; surface
7402
7478
+
Pro
CGG
[ENA]
¡û
>WENV183063431
OLIG01000001
[OLIG] metagenome; surface
8231
8155
-
fMet
CAT
[ENA]
¡û
>WENV183063468
OLIG01000080
[OLIG] metagenome; surface
9100
9183
+
Leu
TAG
[ENA]
¡û
>WENV183063452
OLIG01000049
[OLIG] metagenome; surface
9903
9976
+
Ala
GGC
[ENA]
¡û
>WENV183063441
OLIG01000010
[OLIG] metagenome; surface
11711
11636
-
His
GTG
[ENA]
¡û
>WENV183063453
OLIG01000050
[OLIG] metagenome; surface
13123
13050
-
Gly
TCC
[ENA]
¡û
>WENV183063439
OLIG01000010
[OLIG] metagenome; surface
13778
13853
+
Arg
TCT
[ENA]
¡û
>WENV183063449
OLIG01000040
[OLIG] metagenome; surface
15328
15413
+
Ser
TGA
[ENA]
¡û
>WENV183063459
OLIG01000053
[OLIG] metagenome; surface
17288
17371
+
Leu
CAG
[ENA]
¡û
>WENV183063447
OLIG01000030
[OLIG] metagenome; surface
20231
20158
-
Arg
CCT
[ENA]
¡û
>WENV183063442
OLIG01000011
[OLIG] metagenome; surface
22669
22595
-
Ala
TGC
[ENA]
¡û
>WENV183063448
OLIG01000031
[OLIG] metagenome; surface
22929
22842
-
Ser
CGA
[ENA]
¡û
>WENV183063443
OLIG01000012
[OLIG] metagenome; surface
26894
26820
-
Arg
CCT
[ENA]
¡û
>WENV183063446
OLIG01000030
[OLIG] metagenome; surface
27754
27827
+
Ala
CGC
[ENA]
¡û
>WENV183063430
OLIG01000001
[OLIG] metagenome; surface
29286
29214
-
Arg
CCG
[ENA]
¡û
>WENV183063433
OLIG01000003
[OLIG] metagenome; surface
34589
34505
-
Leu
CAA
[ENA]
¡û
>WENV183063436
OLIG01000006
[OLIG] metagenome; surface
37975
37888
-
Leu
GAG
[ENA]
¡û
>WENV183063438
OLIG01000007
[OLIG] metagenome; surface
41376
41305
-
Gln
TTG
[ENA]
¡û
>WENV183063437
OLIG01000007
[OLIG] metagenome; surface
41643
41569
-
Arg
TCT
[ENA]
¡û
>WENV183063440
OLIG01000010
[OLIG] metagenome; surface
46404
46479
+
Pro
TGG
[ENA]
¡û
>WENV183063434
OLIG01000004
[OLIG] metagenome; surface
53104
53178
+
Ile
GAT
[ENA]
¡û
>WENV183063435
OLIG01000005
[OLIG] metagenome; surface
54736
54662
-
Val
CAC
[ENA]
¡û
>WENV183063429
OLIG01000001
[OLIG] metagenome; surface
74758
74684
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK