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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OLLP] soil metagenome; soil
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092984
OLLP01000773
[OLLP] soil metagenome; soil
88
-1
-
Ser
GCT
[ENA]
¡û
>WENV183092975
OLLP01000754
[OLLP] soil metagenome; soil
418
502
+
Leu
CAG
[ENA]
¡û
>WENV183092958
OLLP01000121
[OLLP] soil metagenome; soil
575
500
-
Sup
CTA
[ENA]
¡û
>WENV183092961
OLLP01000581
[OLLP] soil metagenome; soil
629
545
-
Leu
GAG
[ENA]
¡û
>WENV183092973
OLLP01000745
[OLLP] soil metagenome; soil
768
842
+
Arg
CCG
[ENA]
¡û
>WENV183092981
OLLP01000767
[OLLP] soil metagenome; soil
957
1032
+
Val
TAC
[ENA]
¡û
>WENV183092985
OLLP01000774
[OLLP] soil metagenome; soil
987
902
-
Ser
CGA
[ENA]
¡û
>WENV183092982
OLLP01000767
[OLLP] soil metagenome; soil
1079
1152
+
Lys
CTT
[ENA]
¡û
>WENV183092972
OLLP01000743
[OLLP] soil metagenome; soil
1143
1071
-
Trp
CCA
[ENA]
¡û
>WENV183092969
OLLP01000710
[OLLP] soil metagenome; soil
1450
1524
+
Ala
GGC
[ENA]
¡û
>WENV183092960
OLLP01000532
[OLLP] soil metagenome; soil
1519
1448
-
Gln
CTG
[ENA]
¡û
>WENV183092974
OLLP01000751
[OLLP] soil metagenome; soil
2305
2231
-
Lys
TTT
[ENA]
¡û
>WENV183092988
OLLP01000792
[OLLP] soil metagenome; soil
2409
2324
-
Ser
TGA
[ENA]
¡û
>WENV183092966
OLLP01000651
[OLLP] soil metagenome; soil
2458
2383
-
Thr
CGT
[ENA]
¡û
>WENV183092983
OLLP01000772
[OLLP] soil metagenome; soil
2682
2610
-
fMet
CAT
[ENA]
¡û
>WENV183092959
OLLP01000264
[OLLP] soil metagenome; soil
3096
3167
+
Cys
GCA
[ENA]
¡û
>WENV183092963
OLLP01000636
[OLLP] soil metagenome; soil
3134
3223
+
Ser
GGA
[ENA]
¡û
>WENV183092978
OLLP01000762
[OLLP] soil metagenome; soil
3361
3434
+
Thr
TGT
[ENA]
¡û
>WENV183092979
OLLP01000762
[OLLP] soil metagenome; soil
3443
3526
+
Tyr
GTA
[ENA]
¡û
>WENV183092968
OLLP01000692
[OLLP] soil metagenome; soil
3589
3673
+
Leu
CAA
[ENA]
¡û
>WENV183092980
OLLP01000762
[OLLP] soil metagenome; soil
3764
3837
+
Gly
TCC
[ENA]
¡û
>WENV183092962
OLLP01000632
[OLLP] soil metagenome; soil
3870
3797
-
Gly
CCC
[ENA]
¡û
>WENV183092967
OLLP01000673
[OLLP] soil metagenome; soil
4020
3946
-
His
GTG
[ENA]
¡û
>WENV183092964
OLLP01000642
[OLLP] soil metagenome; soil
4260
4334
+
Met
CAT
[ENA]
¡û
>WENV183092986
OLLP01000775
[OLLP] soil metagenome; soil
7182
7256
+
Pro
GGG
[ENA]
¡û
>WENV183092965
OLLP01000642
[OLLP] soil metagenome; soil
7284
7358
+
Asn
GTT
[ENA]
¡û
>WENV183092971
OLLP01000725
[OLLP] soil metagenome; soil
8442
8371
-
Cys
GCA
[ENA]
¡û
>WENV183092987
OLLP01000776
[OLLP] soil metagenome; soil
8801
8875
+
Met
CAT
[ENA]
¡û
>WENV183092977
OLLP01000761
[OLLP] soil metagenome; soil
11331
11247
-
Leu
GAG
[ENA]
¡û
>WENV183092976
OLLP01000761
[OLLP] soil metagenome; soil
14058
14131
+
Gly
GCC
[ENA]
¡û
>WENV183092970
OLLP01000725
[OLLP] soil metagenome; soil
15521
15439
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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