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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA gene List
[OLMY] human gut metagenome; human gut
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093530
OLMY01001665
[OLMY] human gut metagenome; human gut
88
3
-
Ser
TGA
[ENA]
¡û
>WENV183093510
OLMY01000390
[OLMY] human gut metagenome; human gut
97
179
+
Leu
CAG
[ENA]
¡û
>WENV183093529
OLMY01001525
[OLMY] human gut metagenome; human gut
106
23
-
Tyr
GTA
[ENA]
¡û
>WENV183093535
OLMY01002422
[OLMY] human gut metagenome; human gut
121
50
-
Cys
GCA
[ENA]
¡û
>WENV183093507
OLMY01000304
[OLMY] human gut metagenome; human gut
123
195
+
Glu
CTC
[ENA]
¡û
>WENV183093500
OLMY01000124
[OLMY] human gut metagenome; human gut
154
67
-
Ser
GCT
[ENA]
¡û
>WENV183093533
OLMY01002084
[OLMY] human gut metagenome; human gut
164
238
+
Ile
GAT
[ENA]
¡û
>WENV183093524
OLMY01001203
[OLMY] human gut metagenome; human gut
186
116
-
Gly
TCC
[ENA]
¡û
>WENV183093511
OLMY01000390
[OLMY] human gut metagenome; human gut
203
287
+
Leu
GAG
[ENA]
¡û
>WENV183093528
OLMY01001525
[OLMY] human gut metagenome; human gut
205
133
-
Thr
TGT
[ENA]
¡û
>WENV183093534
OLMY01002084
[OLMY] human gut metagenome; human gut
255
329
+
Ala
TGC
[ENA]
¡û
>WENV183093527
OLMY01001525
[OLMY] human gut metagenome; human gut
283
210
-
Glu
TTC
[ENA]
¡û
>WENV183093523
OLMY01001203
[OLMY] human gut metagenome; human gut
286
212
-
Phe
GAA
[ENA]
¡û
>WENV183093515
OLMY01001049
[OLMY] human gut metagenome; human gut
359
433
+
Ile2
CAT
[ENA]
¡û
>WENV183093531
OLMY01001726
[OLMY] human gut metagenome; human gut
373
445
+
Arg
CCT
[ENA]
¡û
>WENV183093522
OLMY01001203
[OLMY] human gut metagenome; human gut
378
304
-
fMet
CAT
[ENA]
¡û
>WENV183093517
OLMY01001166
[OLMY] human gut metagenome; human gut
378
449
+
Gln
CTG
[ENA]
¡û
>WENV183093526
OLMY01001525
[OLMY] human gut metagenome; human gut
384
313
-
Asn
GTT
[ENA]
¡û
>WENV183093498
OLMY01000094
[OLMY] human gut metagenome; human gut
459
534
+
Arg
TCT
[ENA]
¡û
>WENV183093521
OLMY01001203
[OLMY] human gut metagenome; human gut
474
386
-
Leu
TAA
[ENA]
¡û
>WENV183093525
OLMY01001518
[OLMY] human gut metagenome; human gut
482
553
+
Cys
GCA
[ENA]
¡û
>WENV183093520
OLMY01001203
[OLMY] human gut metagenome; human gut
551
477
-
Val
TAC
[ENA]
¡û
>WENV183093532
OLMY01001727
[OLMY] human gut metagenome; human gut
598
527
-
Gln
TTG
[ENA]
¡û
>WENV183093519
OLMY01001203
[OLMY] human gut metagenome; human gut
630
555
-
Asp
GTC
[ENA]
¡û
>WENV183093504
OLMY01000221
[OLMY] human gut metagenome; human gut
650
738
+
Ser
GGA
[ENA]
¡û
>WENV183093516
OLMY01001122
[OLMY] human gut metagenome; human gut
715
628
-
Leu
TAA
[ENA]
¡û
>WENV183093518
OLMY01001203
[OLMY] human gut metagenome; human gut
723
649
-
Ile2
CAT
[ENA]
¡û
>WENV183093514
OLMY01000601
[OLMY] human gut metagenome; human gut
1114
1038
-
Ala
TGC
[ENA]
¡û
>WENV183093513
OLMY01000601
[OLMY] human gut metagenome; human gut
1251
1177
-
Ile
GAT
[ENA]
¡û
>WENV183093495
OLMY01000032
[OLMY] human gut metagenome; human gut
1459
1532
+
fMet
CAT
[ENA]
¡û
>WENV183093512
OLMY01000396
[OLMY] human gut metagenome; human gut
2289
2363
+
Pro
TGG
[ENA]
¡û
>WENV183093509
OLMY01000385
[OLMY] human gut metagenome; human gut
2585
2501
-
Leu
CAA
[ENA]
¡û
>WENV183093508
OLMY01000365
[OLMY] human gut metagenome; human gut
2812
2886
+
Asn
GTT
[ENA]
¡û
>WENV183093494
OLMY01000028
[OLMY] human gut metagenome; human gut
3452
3534
+
Tyr
GTA
[ENA]
¡û
>WENV183093503
OLMY01000213
[OLMY] human gut metagenome; human gut
3874
3801
-
Trp
CCA
[ENA]
¡û
>WENV183093499
OLMY01000105
[OLMY] human gut metagenome; human gut
4009
3934
-
Val
TAC
[ENA]
¡û
>WENV183093505
OLMY01000227
[OLMY] human gut metagenome; human gut
4301
4227
-
Met
CAT
[ENA]
¡û
>WENV183093506
OLMY01000266
[OLMY] human gut metagenome; human gut
4324
4397
+
Lys
TTT
[ENA]
¡û
>WENV183093501
OLMY01000143
[OLMY] human gut metagenome; human gut
4387
4316
-
Gln
CTG
[ENA]
¡û
>WENV183093497
OLMY01000060
[OLMY] human gut metagenome; human gut
4838
4913
+
His
GTG
[ENA]
¡û
>WENV183093502
OLMY01000213
[OLMY] human gut metagenome; human gut
5274
5202
-
Thr
GGT
[ENA]
¡û
>WENV183093484
OLMY01000001
[OLMY] human gut metagenome; human gut
7717
7791
+
Ile
TAT
[ENA]
¡û
>WENV183093485
OLMY01000001
[OLMY] human gut metagenome; human gut
7797
7870
+
Lys
TTT
[ENA]
¡û
>WENV183093493
OLMY01000020
[OLMY] human gut metagenome; human gut
8102
8029
-
Lys
CTT
[ENA]
¡û
>WENV183093486
OLMY01000001
[OLMY] human gut metagenome; human gut
8496
8579
+
Leu
TAA
[ENA]
¡û
>WENV183093491
OLMY01000013
[OLMY] human gut metagenome; human gut
9291
9216
-
Pro
CGG
[ENA]
¡û
>WENV183093490
OLMY01000013
[OLMY] human gut metagenome; human gut
9447
9520
+
Phe
GAA
[ENA]
¡û
>WENV183093487
OLMY01000007
[OLMY] human gut metagenome; human gut
9986
10057
+
Gln
TTG
[ENA]
¡û
>WENV183093496
OLMY01000059
[OLMY] human gut metagenome; human gut
11738
11664
-
Thr
TGT
[ENA]
¡û
>WENV183093492
OLMY01000020
[OLMY] human gut metagenome; human gut
14982
15056
+
Asp
GTC
[ENA]
¡û
>WENV183093489
OLMY01000009
[OLMY] human gut metagenome; human gut
16597
16523
-
Ile2
CAT
[ENA]
¡û
>WENV183093488
OLMY01000007
[OLMY] human gut metagenome; human gut
17106
17034
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK