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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA gene List
[OMGD] human gut metagenome; feces
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183490911
OMGD01001009
[OMGD] human gut metagenome; feces
37
112
+
Pro
TGG
[ENA]
¡û
>WENV183490904
OMGD01000015
[OMGD] human gut metagenome; feces
56
138
+
Leu
CAG
[ENA]
¡û
>WENV183490910
OMGD01000970
[OMGD] human gut metagenome; feces
58
131
+
Trp
CCA
[ENA]
¡û
>WENV183490905
OMGD01000015
[OMGD] human gut metagenome; feces
170
243
+
Gly
GCC
[ENA]
¡û
>WENV183490907
OMGD01000082
[OMGD] human gut metagenome; feces
249
334
+
Ser
TGA
[ENA]
¡û
>WENV183490906
OMGD01000015
[OMGD] human gut metagenome; feces
259
343
+
Leu
TAA
[ENA]
¡û
>WENV183490912
OMGD01001224
[OMGD] human gut metagenome; feces
288
376
+
Ser
TGA
[ENA]
¡û
>WENV183490914
OMGD01001595
[OMGD] human gut metagenome; feces
329
418
+
Ser
GCT
[ENA]
¡û
>WENV183490908
OMGD01000629
[OMGD] human gut metagenome; feces
333
407
+
Asp
GTC
[ENA]
¡û
>WENV183490916
OMGD01001779
[OMGD] human gut metagenome; feces
417
490
+
Phe
GAA
[ENA]
¡û
>WENV183490915
OMGD01001595
[OMGD] human gut metagenome; feces
422
495
+
Lys
CTT
[ENA]
¡û
>WENV183490909
OMGD01000777
[OMGD] human gut metagenome; feces
430
514
+
Leu
CAA
[ENA]
¡û
>WENV183490913
OMGD01001224
[OMGD] human gut metagenome; feces
445
535
+
Ser
GCT
[ENA]
¡û
>WENV183490903
OMGD01000006
[OMGD] human gut metagenome; feces
452
378
-
Ala
TGC
[ENA]
¡û
>WENV183490902
OMGD01000006
[OMGD] human gut metagenome; feces
616
542
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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